From 84289edfc1f65e80009f2f6d76adc442408fd50c Mon Sep 17 00:00:00 2001 From: hjulienn <hanna.julienne@gmail.com> Date: Tue, 16 Mar 2021 20:18:12 +0100 Subject: [PATCH] DEBUG: remove filter when saving results --- raiss/filter_format_output.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/raiss/filter_format_output.py b/raiss/filter_format_output.py index d43989e..8ab9525 100644 --- a/raiss/filter_format_output.py +++ b/raiss/filter_format_output.py @@ -20,5 +20,5 @@ def filter_output(zscores, fout, R2_threshold = 0.6, minimum_ld = 5): chr_fo = zscores[['index', 'pos', 'A0', 'A1', 'Z', 'Var', "ld_score"]] chr_fo["imputation_R2"] = 1-chr_fo["Var"] chr_fo.columns = ['rsID','pos','A0','A1','Z', 'Var', "ld_score", "imputation_R2"] - - chr_fo.loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)].to_csv(fout, sep="\t", index=False) + #loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)] + chr_fo.to_csv(fout, sep="\t", index=False) -- GitLab