From 84289edfc1f65e80009f2f6d76adc442408fd50c Mon Sep 17 00:00:00 2001
From: hjulienn <hanna.julienne@gmail.com>
Date: Tue, 16 Mar 2021 20:18:12 +0100
Subject: [PATCH] DEBUG: remove filter when saving results

---
 raiss/filter_format_output.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/raiss/filter_format_output.py b/raiss/filter_format_output.py
index d43989e..8ab9525 100644
--- a/raiss/filter_format_output.py
+++ b/raiss/filter_format_output.py
@@ -20,5 +20,5 @@ def filter_output(zscores, fout, R2_threshold = 0.6, minimum_ld = 5):
     chr_fo = zscores[['index', 'pos', 'A0', 'A1', 'Z', 'Var', "ld_score"]]
     chr_fo["imputation_R2"] = 1-chr_fo["Var"]
     chr_fo.columns = ['rsID','pos','A0','A1','Z', 'Var', "ld_score", "imputation_R2"]
-
-    chr_fo.loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)].to_csv(fout, sep="\t", index=False)
+    #loc[(chr_fo.Var < (1-R2_threshold)) & (chr_fo.ld_score > minimum_ld)]
+    chr_fo.to_csv(fout, sep="\t", index=False)
-- 
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