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Statistical-Genetics
RAISS
Commits
8a0f2f0c
Commit
8a0f2f0c
authored
Mar 16, 2021
by
Hanna JULIENNE
Browse files
Update pipes.py to cast minimum_ld
parent
7335bb0b
Changes
1
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Inline
Side-by-side
raiss/pipes.py
View file @
8a0f2f0c
...
...
@@ -43,5 +43,5 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size,
# and Saving results
minimum_ld
=
20
z_fo
=
"{0}/z_{1}_{2}{3}.txt"
.
format
(
output_folder
,
gwas
,
chrom
,
tag
)
filter_output
(
imputed_zscore
,
z_fo
,
float
(
R2_threshold
),
minimum_ld
=
minimum_ld
)
filter_output
(
imputed_zscore
,
z_fo
,
float
(
R2_threshold
),
minimum_ld
=
float
(
minimum_ld
)
)
print
(
"Save imputation done at {0}"
.
format
(
z_fo
))
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