Commit 8a0f2f0c authored by Hanna  JULIENNE's avatar Hanna JULIENNE
Browse files

Update pipes.py to cast minimum_ld

parent 7335bb0b
......@@ -43,5 +43,5 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size,
# and Saving results
minimum_ld = 20
z_fo = "{0}/z_{1}_{2}{3}.txt".format(output_folder, gwas, chrom, tag)
filter_output(imputed_zscore, z_fo, float(R2_threshold), minimum_ld=minimum_ld)
filter_output(imputed_zscore, z_fo, float(R2_threshold), minimum_ld=float(minimum_ld))
print("Save imputation done at {0}".format(z_fo))
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