Commit af3d8532 authored by hjulienn's avatar hjulienn
Browse files

fix index bug due to pandas update

parent 92f4f96b
......@@ -37,7 +37,7 @@ def add_chromosome_imputation_argument():
parser.add_argument('--R2-threshold', help= "R square (imputation quality) threshold bellow which SNPs are filtered from the output", default = 0.6)
parser.add_argument("--ld-type", help= "Ld can be supplied as plink command --ld-snp-list output files (see raiss.ld_matrix.launch_plink_ld to compute these data using plink) or as a couple of a scipy sparse matrix (.npz )and an .csv containing SNPs index", default="plink")
parser.add_argument('--ref-panel-suffix', help= "end of the suffix for the reference panel files", default = ".eur.1pct.bim")
parser.add_argument('--ref-panel-suffix', help= "end of the suffix for the reference panel files", default = ".bim")
parser.set_defaults(func=launch_chromosome_imputation)
return(parser)
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment