+

impute_jass/impute_jass/ld_matrix.py

@@ -49,7 +49,6 @@ def generate_sparse_matrix(plink_ld, ref_chr_df):
     mat_ld = pd.DataFrame(sym, index=mat_ld.index, columns=mat_ld.columns)
     re_index = ref_chr_df.loc[mat_ld.index].sort_values(by="pos").index
     mat_ld = mat_ld.loc[re_index, re_index]
-#    mat_ld = pd.DataFrame(np.maximum(mat_ld.values, mat_ld.values.transpose()), index=un_index, columns=un_index)
     mat_ld = mat_ld.to_sparse()
     return mat_ld
     #mat_ld.to_pickle(path_ld_mat,, compression='gzip')