From cf85fe069db9c83bbe8aaafb9556faa616373508 Mon Sep 17 00:00:00 2001 From: "hanna.julienne" Date: Fri, 8 Jan 2021 18:26:06 +0100 Subject: [PATCH] update code to adjust to pandas newest version --- raiss/windows.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/raiss/windows.py b/raiss/windows.py index 120981f..707bd0d 100644 --- a/raiss/windows.py +++ b/raiss/windows.py @@ -188,7 +188,8 @@ def impg_like_imputation(ld_file, ref_panel, zscore, window_size, buffer, lamb, # keep only SNP with non negligible explained variance snp_well_predicted = (batch_df.Var < 0.9) - batch_df_filt = batch_df.reindex[in_core_window & snp_well_predicted, zscore_results.columns] + print(batch_df) + batch_df_filt = batch_df.loc[(in_core_window & snp_well_predicted), zscore_results.columns] zscore_results = pd.concat([zscore_results, batch_df_filt]) else: zscore_results = pd.concat([zscore_results, zt]) -- GitLab