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Commit e3237089 authored by Hanna JULIENNE's avatar Hanna JULIENNE
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fix main

parent a889f9c2
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impute_jass/impute_jass/__main__.py
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......@@ -14,7 +14,7 @@ def launch_chromosome_imputation(args):
z_file = "{0}/z_{1}_{2}.txt".format(args.zscore_folder, args.gwas, args.chrom)
zscore = pd.read_csv(z_file)
imputer.chromosome_imputation(args.chrom, zscore, args.ref_panel, args.ld_folder)
imputer.chromosome_imputation(args.chrom, zscore, args.ref_folder, args.ld_folder)
def add_chromosome_imputation_argument(parser):
parser.add_argument('--chrom', required=True, help= "chromosome to impute to the chr\d+ format")
......
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