put inf as ld_score value for typed snps

fee74822 · Hanna JULIENNE · 187af22c · fee74822
Commit fee74822 authored Jan 12, 2021 by Hanna JULIENNE
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raiss/windows.py raiss/windows.py +1 -1

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--- a/raiss/windows.py
+++ b/raiss/windows.py
@@ -72,7 +72,7 @@ def prepare_zscore_for_imputation(ref_panel, zscore):
    zscore = realigned_zfiles_on_panel(ref_panel, zscore)
    zscore['Var'] = -1.0
    zscore['Nsnp_to_impute'] = -1
-    zscore['ld_score'] = -1.0
+    zscore['ld_score'] = np.inf
    #zscore = zscore.loc[zscore.index.intersection(ref_panel.index)]
    return zscore