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Statistical-Genetics
RAISS
Commits
fee74822
Commit
fee74822
authored
Jan 12, 2021
by
Hanna JULIENNE
Browse files
put inf as ld_score value for typed snps
parent
187af22c
Pipeline
#45169
passed with stages
in 1 minute and 13 seconds
Changes
1
Pipelines
1
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Inline
Side-by-side
raiss/windows.py
View file @
fee74822
...
...
@@ -72,7 +72,7 @@ def prepare_zscore_for_imputation(ref_panel, zscore):
zscore
=
realigned_zfiles_on_panel
(
ref_panel
,
zscore
)
zscore
[
'Var'
]
=
-
1.0
zscore
[
'Nsnp_to_impute'
]
=
-
1
zscore
[
'ld_score'
]
=
-
1.0
zscore
[
'ld_score'
]
=
np
.
inf
#zscore = zscore.loc[zscore.index.intersection(ref_panel.index)]
return
zscore
...
...
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