Commit fee74822 authored by Hanna  JULIENNE's avatar Hanna JULIENNE

put inf as ld_score value for typed snps

parent 187af22c
Pipeline #45169 passed with stages
in 1 minute and 13 seconds
......@@ -72,7 +72,7 @@ def prepare_zscore_for_imputation(ref_panel, zscore):
zscore = realigned_zfiles_on_panel(ref_panel, zscore)
zscore['Var'] = -1.0
zscore['Nsnp_to_impute'] = -1
zscore['ld_score'] = -1.0
zscore['ld_score'] = np.inf
#zscore = zscore.loc[zscore.index.intersection(ref_panel.index)]
return zscore
......
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