Commits · master · Statistical-Genetics / RAISS

04 May, 2022 3 commits
- Merge branch 'dev' into 'master' · 91cba587
  Hanna JULIENNE authored May 04, 2022
```
Dev

See merge request !9
```
  91cba587
- Merge branch 'dev' of https://gitlab.pasteur.fr/statistical-genetics/raiss into dev · c25ec683
  Hanna JULIENNE authored May 04, 2022
  
  c25ec683
- correct LOGO · 34e954d3
  Hanna JULIENNE authored May 04, 2022
  
  34e954d3
15 Apr, 2022 1 commit
- finished doc on RAISS tuning · b3672568
  Hanna JULIENNE authored Apr 15, 2022
  
  b3672568
13 Apr, 2022 1 commit
- updated doc for RAISS performance report · 13d0931d
  Hanna JULIENNE authored Apr 13, 2022
  
  13d0931d
28 Mar, 2022 1 commit
- added an essential logo when using RAISS with the command line · 883db9e9
  Hanna JULIENNE authored Mar 28, 2022
  
  883db9e9
11 Mar, 2022 1 commit

Merge branch 'dev' into 'master' · cfa5ee1d

Hanna JULIENNE authored Mar 11, 2022

Improve performance report and made function to generate LD from plink more flexible

See merge request !8

cfa5ee1d

10 Mar, 2022 1 commit
- improvement performance report · 3901cc4d
  Hanna JULIENNE authored Mar 10, 2022
  
  3901cc4d
22 Feb, 2022 1 commit
- improved performance report · 98125ff6
  Hanna JULIENNE authored Feb 22, 2022
  
  98125ff6
16 Feb, 2022 1 commit
- add option for prefix for ref panel file names · 8f919ee4
  Hanna JULIENNE authored Feb 16, 2022
  
  8f919ee4
03 Feb, 2022 2 commits
- Merge branch 'dev' of https://gitlab.pasteur.fr/statistical-genetics/raiss into dev · a3d2b269
  Hanna JULIENNE authored Feb 03, 2022
  
  a3d2b269
- update documentation · 9130f5a4
  Hanna JULIENNE authored Feb 03, 2022
  
  9130f5a4
02 Feb, 2022 3 commits
- Pb2 with name outfolder · cd96b94a
  Lucie TROUBAT authored Feb 02, 2022
  
  cd96b94a
- Pb with name outfolder · d0cb2588
  Lucie TROUBAT authored Feb 02, 2022
  
  d0cb2588
- Generalisation generate_genome_matrices · b3cb6a19
  Lucie TROUBAT authored Feb 02, 2022
  
  b3cb6a19
02 Nov, 2021 1 commit
- add code Snippet in documentation (on perf testing) · f6f688c3
  Hanna JULIENNE authored Nov 02, 2021
  
  f6f688c3
27 Aug, 2021 1 commit
- Merge branch 'hot_fix_v3' into 'master' · 13b5783e
  Hanna JULIENNE authored Aug 27, 2021
```
Update windows.py

See merge request !7
```
  13b5783e
17 Aug, 2021 1 commit
- Update windows.py · 61a05c60
  Hanna JULIENNE authored Aug 17, 2021
  
  61a05c60
10 Jun, 2021 1 commit
- Update version number in setup.py · ba31601c
  Hanna JULIENNE authored Jun 10, 2021
  
  ba31601c
12 Apr, 2021 1 commit
- Update pipes.py · 61238e93
  Hanna JULIENNE authored Apr 12, 2021
  
  61238e93
01 Apr, 2021 2 commits
- Update imputation_R2.py · 0445c550
  Hanna JULIENNE authored Apr 01, 2021
  
  0445c550
- remove filter in impg_like_imputation · 8baaed07
  Hanna JULIENNE authored Apr 01, 2021
  
  8baaed07
16 Mar, 2021 9 commits
- Merge branch 'bug_fix' into 'master' · 1090c897
  Hanna JULIENNE authored Mar 16, 2021
```
Bug fix

See merge request !6
```
  1090c897
- re insert filter when saving results · 45937810
  hjulienn authored Mar 16, 2021
  
  45937810
- DEBUG: remove filter when saving results · 84289edf
  hjulienn authored Mar 16, 2021
  
  84289edf
- modify load LD plink matrix function · 3b326494
  hjulienn authored Mar 16, 2021
  
  3b326494
- print debug · f75d1071
  hjulienn authored Mar 16, 2021
  
  f75d1071
- clean print · 253ad7d6
  hjulienn authored Mar 16, 2021
  
  253ad7d6
- Update pipes.py to cast minimum_ld · 8a0f2f0c
  Hanna JULIENNE authored Mar 16, 2021
  
  8a0f2f0c
- Update __main__.py · 7335bb0b
  Hanna JULIENNE authored Mar 16, 2021
  
  7335bb0b
- add command line argument minimum ld · 730b5011
  hjulienn authored Mar 16, 2021
  
  730b5011
15 Mar, 2021 3 commits
- Merge branch 'bug_fix' into 'master' · 9138e16a
  Hanna JULIENNE authored Mar 15, 2021
```
Bug fix

See merge request !5
```
  9138e16a
- fix index bug due to pandas update · af3d8532
  hjulienn authored Mar 15, 2021
  
  af3d8532
- index update for plink matrix · 92f4f96b
  hjulienn authored Mar 15, 2021
  
  92f4f96b
19 Feb, 2021 5 commits
- stratification function · 01ecc3b2
  hjulienn authored Feb 19, 2021
  
  01ecc3b2
- update imputation_R2 · 4abc5ace
  hjulienn authored Feb 19, 2021
  
  4abc5ace
- update imputation_R2 · 4b88f317
  hjulienn authored Feb 19, 2021
  
  4b88f317
- deal with index duplicateqs in the grid_search function · ee6223d1
  hjulienn authored Feb 19, 2021
  
  ee6223d1
- add stratification for performance test · 64be0d3f
  hjulienn authored Feb 19, 2021
  
  64be0d3f
12 Jan, 2021 1 commit
- put inf as ld_score value for typed snps · fee74822
  Hanna JULIENNE authored Jan 12, 2021
  
  fee74822