Commits · master · Statistical-Genetics / RAISS

23 Jan, 2023 1 commit
- specify types when reading regions files to complute ld matrices · 03e7ada2
  Hanna JULIENNE authored Jan 23, 2023
  
  03e7ada2
07 Dec, 2022 3 commits
- Merge branch 'new_sanity_checks' into 'master' · 9b3c6156
  Hanna JULIENNE authored Dec 07, 2022
```
New sanity checks

See merge request !10
```
  9b3c6156
- improved doc+ provide LD-independent regions for hg38 · a62e227c
  hjulienn authored Dec 07, 2022
  
  a62e227c
- catch error when missing argument for RAISS command · 1a7c367e
  hjulienn authored Dec 07, 2022
  
  1a7c367e
06 Dec, 2022 1 commit
- fix failed saved of performance report+ compacted report function · 00f6dbac
  hjulienn authored Dec 06, 2022
  
  00f6dbac
05 Dec, 2022 3 commits
- format sanity check output to show pvalue slice · e1112ac3
  hjulienn authored Dec 05, 2022
  
  e1112ac3
- fiw type · 94125abc
  hjulienn authored Dec 05, 2022
  
  94125abc
- add an argument to pass the number of available cpu · c4122097
  hjulienn authored Dec 05, 2022
  
  c4122097
02 Dec, 2022 5 commits
- add missing argument · 6ae2313c
  Hanna JULIENNE authored Dec 02, 2022
  
  6ae2313c
- remove obsolete argument · e7549c14
  Hanna JULIENNE authored Dec 02, 2022
  
  e7549c14
- fixing typo and adding export of perf report · 094cc4b3
  Hanna JULIENNE authored Dec 02, 2022
  
  094cc4b3
- new entry point to produce performance reports · c478f681
  Hanna JULIENNE authored Dec 02, 2022
  
  c478f681
- remove useless copy · afe5fbc4
  Hanna JULIENNE authored Dec 02, 2022
  
  afe5fbc4
24 Nov, 2022 3 commits
- short description of sanity checks in the doc · 42e08f6f
  Hanna JULIENNE authored Nov 24, 2022
  
  42e08f6f
- perfect report to have observed over expected number of hits · 51bb5aa0
  Hanna JULIENNE authored Nov 24, 2022
  
  51bb5aa0
- add sanity check option · 2465911a
  Hanna JULIENNE authored Nov 24, 2022
  
  2465911a
23 Nov, 2022 1 commit
- new function for reporting sanity check metrics · f78fc9cd
  Hanna JULIENNE authored Nov 23, 2022
  
  f78fc9cd
04 May, 2022 3 commits
- Merge branch 'dev' into 'master' · 91cba587
  Hanna JULIENNE authored May 04, 2022
```
Dev

See merge request !9
```
  91cba587
- Merge branch 'dev' of https://gitlab.pasteur.fr/statistical-genetics/raiss into dev · c25ec683
  Hanna JULIENNE authored May 04, 2022
  
  c25ec683
- correct LOGO · 34e954d3
  Hanna JULIENNE authored May 04, 2022
  
  34e954d3
15 Apr, 2022 1 commit
- finished doc on RAISS tuning · b3672568
  Hanna JULIENNE authored Apr 15, 2022
  
  b3672568
13 Apr, 2022 1 commit
- updated doc for RAISS performance report · 13d0931d
  Hanna JULIENNE authored Apr 13, 2022
  
  13d0931d
28 Mar, 2022 1 commit
- added an essential logo when using RAISS with the command line · 883db9e9
  Hanna JULIENNE authored Mar 28, 2022
  
  883db9e9
11 Mar, 2022 1 commit

Merge branch 'dev' into 'master' · cfa5ee1d

Hanna JULIENNE authored Mar 11, 2022

Improve performance report and made function to generate LD from plink more flexible

See merge request !8

cfa5ee1d

10 Mar, 2022 1 commit
- improvement performance report · 3901cc4d
  Hanna JULIENNE authored Mar 10, 2022
  
  3901cc4d
22 Feb, 2022 1 commit
- improved performance report · 98125ff6
  Hanna JULIENNE authored Feb 22, 2022
  
  98125ff6
16 Feb, 2022 1 commit
- add option for prefix for ref panel file names · 8f919ee4
  Hanna JULIENNE authored Feb 16, 2022
  
  8f919ee4
03 Feb, 2022 2 commits
- Merge branch 'dev' of https://gitlab.pasteur.fr/statistical-genetics/raiss into dev · a3d2b269
  Hanna JULIENNE authored Feb 03, 2022
  
  a3d2b269
- update documentation · 9130f5a4
  Hanna JULIENNE authored Feb 03, 2022
  
  9130f5a4
02 Feb, 2022 3 commits
- Pb2 with name outfolder · cd96b94a
  Lucie TROUBAT authored Feb 02, 2022
  
  cd96b94a
- Pb with name outfolder · d0cb2588
  Lucie TROUBAT authored Feb 02, 2022
  
  d0cb2588
- Generalisation generate_genome_matrices · b3cb6a19
  Lucie TROUBAT authored Feb 02, 2022
  
  b3cb6a19
02 Nov, 2021 1 commit
- add code Snippet in documentation (on perf testing) · f6f688c3
  Hanna JULIENNE authored Nov 02, 2021
  
  f6f688c3
27 Aug, 2021 1 commit
- Merge branch 'hot_fix_v3' into 'master' · 13b5783e
  Hanna JULIENNE authored Aug 27, 2021
```
Update windows.py

See merge request !7
```
  13b5783e
17 Aug, 2021 1 commit
- Update windows.py · 61a05c60
  Hanna JULIENNE authored Aug 17, 2021
  
  61a05c60
10 Jun, 2021 1 commit
- Update version number in setup.py · ba31601c
  Hanna JULIENNE authored Jun 10, 2021
  
  ba31601c
12 Apr, 2021 1 commit
- Update pipes.py · 61238e93
  Hanna JULIENNE authored Apr 12, 2021
  
  61238e93
01 Apr, 2021 2 commits
- Update imputation_R2.py · 0445c550
  Hanna JULIENNE authored Apr 01, 2021
  
  0445c550
- remove filter in impg_like_imputation · 8baaed07
  Hanna JULIENNE authored Apr 01, 2021
  
  8baaed07
16 Mar, 2021 1 commit
- Merge branch 'bug_fix' into 'master' · 1090c897
  Hanna JULIENNE authored Mar 16, 2021
```
Bug fix

See merge request !6
```
  1090c897