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  • Statistical-Genetics
  • RAISS
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  • #1
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Issue created Nov 23, 2018 by Hervé MENAGER@hmenagerDeveloper

RAISS doc typos

Here are a few typos i spotted in the docs for RAISS:

  • dependancies -> dependencies
  • RAISS requires plink version 1.9
  • plink version 1.9 -> would be super nice to add the link to the plink homepage
  • To save computation the LD is computed and saved perform the imputation is performed. -> I do not understand this sentence
  • ... between SNPs in regions ...
  • For an european ancestry
  • in region of approximately LD-independant -> in approximately LD-independent regions
  • check RST link format in "PLINK formats https://www.cog-genomics.org/plink2/formats"
  • This format can be obtained with the JASS pre-processing package (add link to JASS pre-processing)
  • The raiss package outputs imputed GWAS files
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