Commit 31273d62 authored by Hanna  JULIENNE's avatar Hanna JULIENNE

corrected documentation

parent eb8f3068
Pipeline #10226 passed with stages
in 1 minute and 16 seconds
......@@ -37,7 +37,7 @@ extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.napoleon',
'sphinx.ext.coverage',
'nbsphinx',
#'nbsphinx',
'sphinx.ext.mathjax',
'sphinx.ext.viewcode',
'sphinx.ext.autosummary',
......
......@@ -88,12 +88,12 @@ Output
The raiss package outputs imputed GWAS files in the tabular format:
..TODO suppress complementary columns
+------------+---+--+----------------+-----+-----+----------------+------------------+---------+---------+
| |A0 |A1| Nsnp_to_impute |Var |Z |condition_number|correct_inversion |ld_score | pos |
+============+===+==+================+=====+=====+================+==================+=========+=========+
| rs11584349 |C | T| 18 | 0.85|-0.28| 116.9 | False | 1.34 | 1000156 |
+------------+---+--+----------------+-----+-----+----------------+------------------+---------+---------+
+-------------+----------+------------+------------+---------+-------+----------+
| snp_ids | position | Ref_allele | Alt_allele | z_score | Var | ld_score |
+=============+==========+============+============+=========+=======+==========+
| rs3802985 | 198510 | T | C | 0.334 | -1.0 | -1.0 |
| rs111876722 | 201922 | C | T | 0.297 | 0.16 | 5.412 |
+-------------+----------+------------+------------+---------+-------+----------+
Command Line Usage
==================
......
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