Update pipes.py

raiss/pipes.py

@@ -29,7 +29,7 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size, l2_regular
     # Reading of inputs
     z_file = "{0}/z_{1}_{2}.txt".format(zscore_folder, gwas, chrom)
     zscore = pd.read_csv(z_file, index_col=0, sep="\t")
-    ref_panel_file = ref_folder + "/"+ chrom +".eur.1pct.bim"
+    ref_panel_file = ref_folder + "/"+ chrom +".FIN.bim"
     ref_panel = pd.read_csv(ref_panel_file, sep="\t", names=['chr', "nothing", 'pos', 'Ref_all', 'alt_all'], index_col = 1)
 
      # imputation