Commit b57b5b60 authored by Chunzi  YAO's avatar Chunzi YAO

Update pipes.py

parent 07ac3311
......@@ -29,7 +29,7 @@ def save_chromosome_imputation(gwas, chrom, window_size, buffer_size, l2_regular
# Reading of inputs
z_file = "{0}/z_{1}_{2}.txt".format(zscore_folder, gwas, chrom)
zscore = pd.read_csv(z_file, index_col=0, sep="\t")
ref_panel_file = ref_folder + "/"+ chrom +".eur.1pct.bim"
ref_panel_file = ref_folder + "/"+ chrom +".FIN.bim"
ref_panel = pd.read_csv(ref_panel_file, sep="\t", names=['chr', "nothing", 'pos', 'Ref_all', 'alt_all'], index_col = 1)
# imputation
......
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