From 8508c4718f2802cff675dd23b4752cae9cd4aa6d Mon Sep 17 00:00:00 2001
From: Hugues ASCHARD <hugues.aschard@pasteur.fr>
Date: Fri, 8 Nov 2019 12:29:03 +0100
Subject: [PATCH] Update Script3_functions.py -- correct bug in add_genes_ucsc
function
---
others/Script3_functions.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/others/Script3_functions.py b/others/Script3_functions.py
index 58826c4..4f1b9f0 100644
--- a/others/Script3_functions.py
+++ b/others/Script3_functions.py
@@ -188,7 +188,7 @@ def add_genes_ucsc(results_snps, summary_directory):
recap = pd.DataFrame()
recap['Genes'] = genes.groupby('SNP')['Gene'].apply(list).apply(np.unique)
- recap['SNP'] = recap.index
+ recap['SNPid'] = recap.index
results_snps = pd.merge(results_snps, recap, on = 'SNP', how = 'left')
results_snps['Genes'] = results_snps['Genes'].apply(list_to_string)
--
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