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To optimize computation time, the Script 2 is made to launch a job array on the cluster. To do that, we cut the genome in blocks with a fixed SNPs number, and we launch CMS on each blocks in parallel.
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The number of blocks should depend on the number of phenotypes and the number of individuals.
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For example, with 6k individuals and 150 phenotypes, blocks of 100 SNPs are adapted. |
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