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# [Input format](Input format)
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# Pipeline steps
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Welcome to the runCMS wiki.
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You will find here information on input format, pipeline usage and advices to optimize your analysis.
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# Contents
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## [Input format](Input format)
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## Pipeline steps
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### - [Step 1: Prepare data](Step 1)
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### - [Step 2: Launch analysis](Step 2)
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### - [Step 3: Parse results](Step 3)
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## Advices
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### - How to fix covariates number
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### - How to fix number of SNPs per block |
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