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May 30, 2018
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Apolline GALLOIS
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Welcome to the runCMS wiki.
You will find here information on input format, pipeline usage and advices to optimize your analysis.
# Contents
[
Input format
](
Input
format)
### Pipeline steps
[
Step 1: Prepare data
](
Step
1)
[
Step 2: Launch analysis
](
Step
2)
[
Step 3: Parse results
](
Step
3)
To start, take a look at the required
[
input formats
](
Input
format).
### Focus
[
What is the interest of covariates pre-selection?
](
Covariates
pre-selection)
[
How to choose blocks size to optimize parallelization?
](
Parallelization
)
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Then, you will find a complete description of the three pipeline steps here:
-
[
Step 1: Prepare data
](
Step
1)
-
[
Step 2: Launch analysis
](
Step
2)
-
[
Step 3: Parse results
](
Step
3)
For further information, you can ckeck
[
covariates pre-selection interest
](
Covariates
pre-selection) and
[
parallelization strategy
](
Parallelization
)
.
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