diff --git a/FUNCTIONS.R b/FUNCTIONS.R index 41fcfef913f65ab5c06c7eecba0a5159b2731448..aeb5cd6673014728f6cab164507d0785f527b743 100644 --- a/FUNCTIONS.R +++ b/FUNCTIONS.R @@ -41,7 +41,7 @@ runRelativeAntibodyUnits = function(fname1, fname2, MFI_CSV, MFI_N_ANTIGENS, TEM ## converts the median fluorescence intensity (MFI) values into relative antibody units. ## ## ## ## Input: ## - ## - Luminex-200 or Magpix output file or Bioplex raw MFI output file(required) ## + ## - Luminex-200 or Magpix output file or BioPlex raw MFI output file(required) ## ## - Plate layout with bleedcode information (optional) ## ## ## ## Output: ## @@ -210,9 +210,9 @@ runRelativeAntibodyUnits = function(fname1, fname2, MFI_CSV, MFI_N_ANTIGENS, TEM dim(S) #there should be 10 rows } - ## Bioplex data input detected + ## BioPlex data input detected else if (PLATFORM == "Bioplex") { - cat("Guessed MFI input file from a Bioplex platform") + cat("Guessed MFI input file from a BioPlex platform") # In BioPlex outputs, MFI and bead counts are in the same cell with format MFI (counts). # Note that the bead counts may not be present, in that case only the MFI is reported. @@ -498,7 +498,7 @@ getRelativeAntibodyUnits = function(RAW_MFI_FILE_NAME, RAW_MFI_FILE_PATH, cat("******************Running RAU function******************\n") - # Get Luminex-MagPix full file path + # Get Luminex-MagPix-BioPlex full file path fname1 = RAW_MFI_FILE_PATH # Extract working directly of this file