From 055c8b3fb3002383cc0a839ff38f3292a014f379 Mon Sep 17 00:00:00 2001
From: Thomas OBADIA <tobadia@pasteur.fr>
Date: Fri, 29 Apr 2022 15:57:10 +0200
Subject: [PATCH] Update references about Magpix-Luminex to also mention
BioPlex throughout all source code(bis)
---
FUNCTIONS.R | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/FUNCTIONS.R b/FUNCTIONS.R
index 41fcfef..aeb5cd6 100644
--- a/FUNCTIONS.R
+++ b/FUNCTIONS.R
@@ -41,7 +41,7 @@ runRelativeAntibodyUnits = function(fname1, fname2, MFI_CSV, MFI_N_ANTIGENS, TEM
## converts the median fluorescence intensity (MFI) values into relative antibody units. ##
## ##
## Input: ##
- ## - Luminex-200 or Magpix output file or Bioplex raw MFI output file(required) ##
+ ## - Luminex-200 or Magpix output file or BioPlex raw MFI output file(required) ##
## - Plate layout with bleedcode information (optional) ##
## ##
## Output: ##
@@ -210,9 +210,9 @@ runRelativeAntibodyUnits = function(fname1, fname2, MFI_CSV, MFI_N_ANTIGENS, TEM
dim(S) #there should be 10 rows
}
- ## Bioplex data input detected
+ ## BioPlex data input detected
else if (PLATFORM == "Bioplex") {
- cat("Guessed MFI input file from a Bioplex platform")
+ cat("Guessed MFI input file from a BioPlex platform")
# In BioPlex outputs, MFI and bead counts are in the same cell with format MFI (counts).
# Note that the bead counts may not be present, in that case only the MFI is reported.
@@ -498,7 +498,7 @@ getRelativeAntibodyUnits = function(RAW_MFI_FILE_NAME, RAW_MFI_FILE_PATH,
cat("******************Running RAU function******************\n")
- # Get Luminex-MagPix full file path
+ # Get Luminex-MagPix-BioPlex full file path
fname1 = RAW_MFI_FILE_PATH
# Extract working directly of this file
--
GitLab