Commit 6aa97ed2 authored by Tru  HUYNH's avatar Tru HUYNH

initial commit

parent 7b7abd45
GenomeAnalysisTK
\ No newline at end of file
#%Module1.0#####################################################################
##
## GenomeAnalysisTK-3.7 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/GenomeAnalysisTK-3.7' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/GenomeAnalysisTK-3.7 directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/GenomeAnalysisTK-3.7."
}
module-whatis "adds `/BGA2017/GenomeAnalysisTK-3.7' to your PATH environment variable"
prepend-path PATH /BGA2017/GenomeAnalysisTK-3.7
#%Module1.0#####################################################################
##
## IGV_2.3.93 modulefile
##
## modulefiles/IGV_2.3.93. Based from the dot module
## Tru 2009/10/14
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/IGV_2.3.93' to your PATH environment vari
able"
puts stderr "\n\tThis makes it easy to add the /BGA2017/IGV_2.3.93 dire
ctory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/IGV_2.3.93."
}
module-whatis "adds `/BGA2017/IGV_2.3.93' to your PATH environment variable"
prepend-path PATH /BGA2017/IGV_2.3.93
#%Module1.0#####################################################################
##
## MEGAN/Community_unix_6_8_5.g modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/MEGAN/Community_unix_6_8_5' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/MEGAN/Community_unix_6_8_5 directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/MEGAN/Community_unix_6_8_5."
}
module-whatis "adds `/BGA2017/MEGAN/Community_unix_6_8_5' to your PATH environment variable"
prepend-path PATH /BGA2017/MEGAN/Community_unix_6_8_5
#%Module1.0#####################################################################
##
## Oracle_jre-8 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/Oracle_java/jre/8/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/Oracle_java/jre/8/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/Oracle_java/jre/8/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/Oracle_java/jre/8/bin."
}
module-whatis "adds `/BGA2017/Oracle_java/jre/8/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/Oracle_java/jre/8/bin
prepend-path MANPATH /BGA2017/Oracle_java/jre/8/man
prepend-path -d " " CFLAGS "-I/BGA2017/Oracle_java/jre/8/include"
prepend-path -d " " CPPFLAGS "-I/BGA2017/Oracle_java/jre/8/include"
prepend-path -d " " LDFLAGS "-L/BGA2017/Oracle_java/jre/8/lib"
prepend-path LD_RUN_PATH /BGA2017/Oracle_java/jre/8/lib
prepend-path LD_LIBRARY_PATH /BGA2017/Oracle_java/jre/8/lib
#%Module1.0#####################################################################
##
## R-3.4.0 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/R-3.4.0/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/R-3.4.0/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/R-3.4.0/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/R-3.4.0/bin."
}
module-whatis "adds `/BGA2017/R-3.4.0/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/R-3.4.0/bin
prepend-path MANPATH /BGA2017/R-3.4.0/share/man
prepend-path -d " " CFLAGS "-I/BGA2017/R-3.4.0/include"
prepend-path -d " " CPPFLAGS "-I/BGA2017/R-3.4.0/include"
prepend-path -d " " LDFLAGS "-L/BGA2017/R-3.4.0/lib"
prepend-path LD_RUN_PATH /BGA2017/R-3.4.0/lib
prepend-path LD_LIBRARY_PATH /BGA2017/R-3.4.0/lib
#%Module1.0#####################################################################
##
## anaconda3 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/anaconda3/bin' to y
our PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/sratoolkit.2.5.
7-centos_linux64/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/sratoolkit.2.8.2-2-cento
s_linux64/bin."
}
module-whatis "adds `/BGA2017/anaconda3/bin' to your PA
TH environment variable"
prepend-path PATH /BGA2017/anaconda3/bin
#%Module1.0#####################################################################
##
## bedtools2-2.25.0 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/bedtools2-2.26.0/bin' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/bedtools2-2.26.0/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/bedtools2-2.26.0/bin."
}
module-whatis "adds `/BGA2017/bedtools2-2.26.0/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/bedtools2-2.26.0/bin
#%Module1.0#####################################################################
##
## bwa-0.7.13 modulefile
##
## modulefiles/bwa-0.7.13. Based from the dot module
## Tru 2009/10/14
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/bwa-0.7.15' to your PATH environment vari
able"
puts stderr "\n\tThis makes it easy to add the /BGA2017/bwa-0.7.15 dire
ctory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/bwa-0.7.15."
}
module-whatis "adds `/BGA2017/bwa-0.7.15' to your PATH environment variable"
prepend-path PATH /BGA2017/bwa-0.7.15
#%Module1.0#####################################################################
##
## freebayes/v1.1.0-3-g961e5f3 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/freebayes/v1.1.0-3-g961e5f3' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/freebayes/v1.1.0-3-g961e5f3 directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/freebayes/v1.1.0-3-g961e5f3."
}
module-whatis "adds `/BGA2017/freebayes/v1.1.0-3-g961e5f3' to your PATH environment variable"
prepend-path PATH /BGA2017/freebayes/v1.1.0-3-g961e5f3
#%Module1.0#####################################################################
##
## ncbi-blast-2.6.0+-x64-linux modulefile
##
## modulefiles/ncbi-blast-2.6.0+-x64-linux. Based from the dot module
## Tru 2009/10/14
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin."
}
module-whatis "adds `/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin
prepend-path MANPATH /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/share/man
prepend-path -d " " CFLAGS "-I/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/include"
prepend-path -d " " CPPFLAGS "-I/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/include"
prepend-path -d " " LDFLAGS "-L/BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/lib"
prepend-path LD_RUN_PATH /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/lib
prepend-path LD_LIBRARY_PATH /BGA2017/ncbi-blast-2.6.0+-x64-linux/bin/lib
#%Module1.0#####################################################################
##
## blast-2.2.26-x64-linux modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/blast-2.2.26-x64-linux/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/blast-2.2.26-x64-linux/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/blast-2.2.26-x64-linux/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/blast-2.2.26-x64-linux/bin."
}
module-whatis "adds `/BGA2017/blast-2.2.26-x64-linux/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/blast-2.2.26-x64-linux/bin
prepend-path MANPATH /BGA2017/blast-2.2.26-x64-linux/share/man
prepend-path -d " " CFLAGS "-I/BGA2017/blast-2.2.26-x64-linux/include"
prepend-path -d " " CPPFLAGS "-I/BGA2017/blast-2.2.26-x64-linux/include"
prepend-path -d " " LDFLAGS "-L/BGA2017/blast-2.2.26-x64-linux/lib"
prepend-path LD_RUN_PATH /BGA2017/blast-2.2.26-x64-linux/lib
prepend-path LD_LIBRARY_PATH /BGA2017/blast-2.2.26-x64-linux/lib
#%Module1.0#####################################################################
##
## perl-5.24.1 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/perl-5.24.1/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/perl-5.24.1/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/perl-5.24.1/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/perl-5.24.1/bin."
}
module-whatis "adds `/BGA2017/perl-5.24.1/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/perl-5.24.1/bin
prepend-path MANPATH /BGA2017/perl-5.24.1/share/man
prepend-path LD_RUN_PATH /BGA2017/perl-5.24.1/lib
prepend-path LD_LIBRARY_PATH /BGA2017/perl-5.24.1/lib
#%Module1.0#####################################################################
##
## picard-2.9.2 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/picard-2.9.2' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/picard-2.9.2 directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/picard-2.9.2."
}
module-whatis "adds `/BGA2017/picard-2.9.2' to your PATH environment variable"
prepend-path PATH /BGA2017/picard-2.9.2
#%Module1.0#####################################################################
##
## rdp_classifier_2.11 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tDefine RDPPATH `/BGA2017/rdp_classifier_2.11'"
}
module-whatis "RDPPATH=/BGA2017/rdp_classifier_2.11' "
setenv RDPPATH /BGA2017/rdp_classifier_2.11
#%Module1.0#####################################################################
##
## samtools-1.3 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/samtools-1.4.1/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/samtools-1.4.1/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/samtools-1.4.1/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/samtools-1.4.1/bin."
}
module-whatis "adds `/BGA2017/samtools-1.4.1/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/samtools-1.4.1/bin
prepend-path MANPATH /BGA2017/samtools-1.4.1/share/man
#%Module1.0#####################################################################
##
## sratoolkit.2.8.2-1-centos_linux64 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/sratoolkit.2.8.2-1-centos_linux64/bin' to y
our PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/sratoolkit.2.5.
7-centos_linux64/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/sratoolkit.2.8.2-1-cento
s_linux64/bin."
}
module-whatis "adds `/BGA2017/sratoolkit.2.8.2-1-centos_linux64/bin' to your PA
TH environment variable"
prepend-path PATH /BGA2017/sratoolkit.2.8.2-1-centos_linux64/bin
#%Module1.0#####################################################################
##
## sublime_text_3_build_3126_x64 modulefile
##
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/sublime_text_3_build_3126_x64' to your PATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/sublime_text_3_build_3126_x64 directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/sublime_text_3_build_3126_x64."
}
module-whatis "adds `/BGA2017/sublime_text_3_build_3126_x64' to your PATH environment variable"
prepend-path PATH /BGA2017/sublime_text_3_build_3126_x64
#%Module1.0#####################################################################
##
## vcftools-0.1.14 modulefile
##
proc ModulesHelp { } {
global dotversion
puts stderr "\tAdds `/BGA2017/vcftools-0.1.14/bin' to your PATH environment variable"
puts stderr "\tAdds `/BGA2017/vcftools-0.1.14/share/man' to your MANPATH environment variable"
puts stderr "\n\tThis makes it easy to add the /BGA2017/vcftools-0.1.14/bin directory"
puts stderr "\tto your PATH environment variable. This allows you to"
puts stderr "\trun executables from the /BGA2017/vcftools-0.1.14/bin."
}
module-whatis "adds `/BGA2017/vcftools-0.1.14/bin' to your PATH environment variable"
prepend-path PATH /BGA2017/vcftools-0.1.14/bin
prepend-path MANPATH /BGA2017/vcftools-0.1.14/share/man
prepend-path PERL5LIB /BGA2017/vcftools-0.1.14/share/perl5
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