diff --git a/ISB2017/installation_notes/dynamo.md b/ISB2017/installation_notes/dynamo.md index c8f7809715688716807b96df0ca352541bc64a6e..dd946acd4fbbbab2067086c3f60cb9a72f094a1e 100644 --- a/ISB2017/installation_notes/dynamo.md +++ b/ISB2017/installation_notes/dynamo.md @@ -1,13 +1,13 @@ -# Download dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR.tar +# Download dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR.tar -- from https://drive.google.com/uc?export=download&confirm=DTUM&id=0B_T9apWxsZjMOGN3NkVnV3FNLTQ +- from https://drive.google.com/uc?id=0B_T9apWxsZjMTEszNGpvVHVuYnM - requires openmpi-devel ``` -mkdir /ISB2017/dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR -tar -C /ISB2017/dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR -xf dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR.tar -cd /ISB2017/dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR -export DYNAMO_ROOT=/ISB2017/dynamo-v-1.1.272_MCR-9.2.0_GLNXA64_withMCR +mkdir /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR +tar -C /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR -xf dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR.tar +cd /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR +export DYNAMO_ROOT=/ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR source ${DYNAMO_ROOT}/dynamo_activate_linux.sh source ${DYNAMO_ROOT}/dynamo_activate_linux_shipped_MCR.sh module add mpi diff --git a/ISB2017/modulefiles/dynamo/v-1.1.286_MCR-9.2.0_GLNXA64_withMCR b/ISB2017/modulefiles/dynamo/v-1.1.286_MCR-9.2.0_GLNXA64_withMCR new file mode 100644 index 0000000000000000000000000000000000000000..2450189375c8b8b1a4ab05633ad8235812b0c34c --- /dev/null +++ b/ISB2017/modulefiles/dynamo/v-1.1.286_MCR-9.2.0_GLNXA64_withMCR @@ -0,0 +1,34 @@ +#%Module1.0 +# /ISB2017/modulefiles/dynamo/1.1.286_MCR-9.2.0_GLNXA64_withMCR +# dynamo-1.1.286_MCR-9.2.0_GLNXA64_withMCR +proc ModulesHelp { } { + global dotversion + puts stderr "\tdynamo-1.1.286_MCR-9.2.0_GLNXA64_withMCR module" +} +module-whatis "adds `/ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//bin' to your PATH environment variable" + +setenv DYNAMO_ROOT /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//matlab/bin +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//matlab/src +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//cuda/bin +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//mpi +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//examples +prepend-path PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//doc + +prepend-path LD_LIBRARY_PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//MCRLinux/runtime/glnxa64 +prepend-path LD_LIBRARY_PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//MCRLinux/bin/glnxa64 +prepend-path LD_LIBRARY_PATH /ISB2017/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR//MCRLinux/sys/os/glnxa64 + +eval set [ array get env USER ] +set workdir /tmp/$USER/dynamo-v-1.1.253_MRC-9.2.0_GLNXA64_withMCR + +# create directory if necessary +if [ module-info mode load ] { + if { ! [ file exists $workdir ] } { + file mkdir $workdir + } +} + +setenv MCR_CACHE_ROOT /tmp/$USER/dynamo-v-1.1.286_MCR-9.2.0_GLNXA64_withMCR +module add mpi/openmpi-x86_64 +