Work in progress, from a manually installed conda environment to a container based shared image.
Reproducibility, collaboration , paper requirement, moving from your laptop to maestro or the Inception gpulab, ...
From a real world example to a Dockerfile and registry image or Singularity recipe...
This walkthrough assumes that
- you have access to gitlab.pasteur.fr (this can be adapted later or gitlab.com or github.com).
- you are familiar enough with command line (ie you have already use
conda install xxx,
- you have convinced that containers (docker/singularity/...) can help