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.gitlab-ci.yml
Dockerfile
LICENSE
README.md
README.md

installing a jupyter minimal environment in docker

CI produced registry image at registry-gitlab.pasteur.fr/tru/docker-miniconda3-jupyter

singularity conversion if you have singularityCE or apptainer installed

singularity build docker-miniconda3-jupyter.sif  docker://registry-gitlab.pasteur.fr/tru/docker-miniconda3-jupyter:main
singularity exec docker-miniconda3-jupyter.sif jupyter-lab  --no-browser

on Maestro.pasteur.fr

module add apptainer
apptainer build docker-miniconda3-jupyter.sif  docker://registry-gitlab.pasteur.fr/tru/docker-miniconda3-jupyter:main
apptainer exec -B /pasteur docker-miniconda3-jupyter.sif jupyter-lab  --no-browser