diff --git a/Dockerfile b/Dockerfile index 52d7e20682da7eb23ae713625614e1ecaa61cc41..6b3dce135f189da8d94ae4e7df18ea2eb2b27c47 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,5 +1,6 @@ From mambaorg/micromamba:1-bullseye -# uid=1000(mambauser) gid=1000(mambauser) groups=1000(mambauser) +# https://github.com/mamba-org/micromamba-docker +# uid=1000(mambauser) gid=1000(mambauser) groups=1000(mambauser) #RUN id ; ls -ld /var/lib/apt/lists/partial USER root # update the OS @@ -17,7 +18,8 @@ RUN export MAMBA_ROOT_PREFIX=/opt/conda && \ curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \ micromamba create -y --no-deps --name py310-pytorch-1.13.1 --file conda-env-export.yml && \ micromamba activate py310-pytorch-1.13.1 && \ - micromamba env export > /conda-env-export.yml + micromamba env export > /conda-env-export.yml && \ + micromamba clean --all --yes ADD https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/runscript.sh /runscript.sh RUN chmod 755 /runscript.sh diff --git a/Singularity b/Singularity index b2889f18d2b710de4d64706c1c4a1ec7b7378974..d09abd9d7e37d69c330a4c4371bdba8e0274ec5a 100644 --- a/Singularity +++ b/Singularity @@ -18,6 +18,7 @@ curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/ micromamba create -y --no-deps --name py310-pytorch-1.13.1 --file conda-env-export.yml && \ micromamba activate py310-pytorch-1.13.1 && \ micromamba env export > /conda-env-export.yml +micromamba clean --all --yes %runscript export MAMBA_ROOT_PREFIX=/opt/conda && \