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singularity-docker-miniconda3-jupyter

    • Name Last commit Last update
    .gitlab-ci.yml
    Dockerfile
    LICENSE
    README.md
    Singularity
    README.md

    installing a jupyter minimal environment in singularityCE/apptainer and docker

    Merging https://gitlab.pasteur.fr/tru/singularity-miniconda3-jupyter and https://gitlab.pasteur.fr/tru-docker-miniconda3-jupyter with 2 parallel CI builds.

    Attn: :main is the docker image, :latest is the OCI container

    singularity (singularityCE or apptainer installed)

    singularity build miniconda3-jupyter.sif  oras://registry-gitlab.pasteur.fr/tru/singularity-docker-miniconda3-jupyter:latest
singularity exec miniconda3-jupyter.sif jupyter-lab  --no-browser

    on Maestro.pasteur.fr

    module add apptainer
apptainer build miniconda3-jupyter.sif  oras://registry-gitlab.pasteur.fr/tru/singularity-docker-miniconda3-jupyter:latest
apptainer exec -B /pasteur miniconda3-jupyter.sif jupyter-lab  --no-browser

    from cache only

    singularity exec oras://registry-gitlab.pasteur.fr/tru/singularity-docker-miniconda3-jupyter:latest jupyter-lab  --no-browser

    docker image

    docker run -ti docker://registry-gitlab.pasteur.fr/tru/singularity-docker-miniconda3-jupyter:main