diff --git a/Singularity b/Singularity index 8b893e2ddc462c335c39d29fb40ce511ebe011f8..b287731d4d19e536652db68ade160199d5837bd4 100644 --- a/Singularity +++ b/Singularity @@ -1,3 +1,16 @@ BootStrap: docker -From: registry-gitlab.pasteur.fr/tru/docker-miniconda3-jupyter:main +From: continuumio/miniconda3 +%post +# update conda and the OS +conda update conda && \ +conda upgrade --all -y && \ +apt-get update && \ +DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \ +DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \ +DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean + +conda install ipykernel jupyterlab +# download the yml file +# curl https://gitlab.pasteur.fr/tru/conda-container-howto/-/raw/main/pythonnet.yml > pythonnet.yml +# conda env create --file pythonnet.yml diff --git a/Singularity_from_docker b/Singularity_from_docker new file mode 100644 index 0000000000000000000000000000000000000000..8b893e2ddc462c335c39d29fb40ce511ebe011f8 --- /dev/null +++ b/Singularity_from_docker @@ -0,0 +1,3 @@ +BootStrap: docker +From: registry-gitlab.pasteur.fr/tru/docker-miniconda3-jupyter:main +