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Emmanuel QUEVILLON
BIGSdb
Commits
5d46378c
Commit
5d46378c
authored
May 24, 2016
by
Keith Jolley
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Option to select update method on scheme cache refresh page.
parent
c74eaf74
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2
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2 changed files
with
17 additions
and
7 deletions
+17
-7
lib/BIGSdb/RefreshSchemeCachePage.pm
lib/BIGSdb/RefreshSchemeCachePage.pm
+15
-4
scripts/maintenance/update_scheme_caches.pl
scripts/maintenance/update_scheme_caches.pl
+2
-3
No files found.
lib/BIGSdb/RefreshSchemeCachePage.pm
View file @
5d46378c
#Written by Keith Jolley
#Copyright (c) 2015, University of Oxford
#Copyright (c) 2015
-2016
, University of Oxford
#E-mail: keith.jolley@zoo.ox.ac.uk
#
#This file is part of Bacterial Isolate Genome Sequence Database (BIGSdb).
...
...
@@ -53,6 +53,9 @@ sub _print_interface {
$desc
{
0
}
=
'
All schemes
';
say
$q
->
popup_menu
(
-
name
=>
'
scheme
',
-
values
=>
[
0
,
@$schemes
],
-
labels
=>
\
%desc
);
say
q(</fieldset>)
;
say
q(<fieldset style="float:left"><legend>Select method</legend>)
;
say
$q
->
popup_menu
(
-
name
=>
'
method
',
-
values
=>
[
qw(full incremental daily daily_replace)
]
);
say
q(</fieldset>)
;
$self
->
print_action_fieldset
(
{
no_reset
=>
1
,
submit_label
=>
'
Refresh cache
'
}
);
say
$q
->
hidden
(
$_
)
foreach
qw(db page)
;
say
$q
->
end_form
;
...
...
@@ -103,7 +106,13 @@ sub _refresh_caches {
}
else
{
@selected_schemes
=
@$schemes
;
}
my
$set_id
=
$self
->
get_set_id
;
my
$set_id
=
$self
->
get_set_id
;
my
$method
=
$q
->
param
('
method
');
my
%allowed_methods
=
map
{
$_
=>
1
}
qw(full incremental daily daily_replace)
;
if
(
!
$allowed_methods
{
$method
}
)
{
$logger
->
error
("
Invalid method '
$method
' selected. Using 'full'.
");
$method
=
'
full
';
}
local
$|
=
1
;
foreach
my
$scheme_id
(
@selected_schemes
)
{
my
$scheme_info
=
$self
->
{'
datastore
'}
->
get_scheme_info
(
$scheme_id
,
{
set_id
=>
$set_id
,
get_pk
=>
1
}
);
...
...
@@ -115,8 +124,10 @@ sub _refresh_caches {
$self
->
{'
mod_perl_request
'}
->
rflush
;
return
if
$self
->
{'
mod_perl_request
'}
->
connection
->
aborted
;
}
$self
->
{'
datastore
'}
->
create_temp_isolate_scheme_fields_view
(
$scheme_id
,
{
cache
=>
1
}
);
$self
->
{'
datastore
'}
->
create_temp_scheme_status_table
(
$scheme_id
,
{
cache
=>
1
}
);
$self
->
{'
datastore
'}
->
create_temp_isolate_scheme_fields_view
(
$scheme_id
,
{
cache
=>
1
,
method
=>
$method
}
);
$self
->
{'
datastore
'}
->
create_temp_scheme_status_table
(
$scheme_id
,
{
cache
=>
1
,
method
=>
$method
}
)
;
say
q(done.<br />)
;
}
}
...
...
scripts/maintenance/update_scheme_caches.pl
View file @
5d46378c
...
...
@@ -75,7 +75,7 @@ ${bold}NAME$norm
$
{
bold
}
update_scheme_caches
.
pl$norm
-
Update
scheme
field
caches
$
{
bold
}
SYNOPSIS$norm
$
{
bold
}
update_scheme_caches
.
pl
--
database
$
{
under
}
NAME$norm
$
{
bold
}
$
norm
[
$
{
under
}
options$norm
]
$
{
bold
}
update_scheme_caches
.
pl
--
database
$
{
under
}
NAME$norm
$
{
bold
}
$
{
norm
}
[
$
{
under
}
options$norm
]
$
{
bold
}
OPTIONS$norm
...
...
@@ -97,8 +97,7 @@ ${bold}--quiet$norm
${bold}--schemes$norm ${under}SCHEMES$norm
Comma-separated list of scheme ids to use.
If left empty, all schemes will be updated.
If left empty, all schemes will be updated.
HELP
return;
}
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