- 02 Dec, 2014 7 commits
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Keith Jolley authored
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Keith Jolley authored
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Keith Jolley authored
This isn't used for anything now.
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Keith Jolley authored
These were too awkward to curate and had a high maintenance overhead. They will be largely replaced by the use of submitter accounts.
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Keith Jolley authored
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Keith Jolley authored
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Keith Jolley authored
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- 01 Dec, 2014 1 commit
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Keith Jolley authored
New permission update page.
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- 29 Nov, 2014 1 commit
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Keith Jolley authored
If clean_locus was called with different options for the same locus, results could get mixed up. Also, if a different memory address was used for the arguemnt hashref memoization wouldn't occur anyway, since the argument hashref would always be different even if the arguments were the same.
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- 28 Nov, 2014 2 commits
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Keith Jolley authored
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Keith Jolley authored
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- 22 Nov, 2014 1 commit
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Keith Jolley authored
Use temp cache table that was developed for querying.
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- 21 Nov, 2014 1 commit
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Keith Jolley authored
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- 20 Nov, 2014 4 commits
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Keith Jolley authored
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Keith Jolley authored
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Keith Jolley authored
When using the --new_only option, isolates were tagged if they had contigs in their sequence bin but no alleles designated/tagged. Sometimes, however, a curator may have tagged the MLST loci manually, so the remaining loci will not be tagged with this option. Now we have an additional option '--new_max_alleles' to set a maximum number of designations/tags that have to have been made before the isolate is no longer considered new.
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Keith Jolley authored
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- 14 Nov, 2014 3 commits
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Keith Jolley authored
Datastore::run_simple_query has been deprecated.
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Keith Jolley authored
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Keith Jolley authored
Sometimes there is a need to completely ignore a designation so that it is not seen by an end user, or used in analyses, but should still remain in the database. Ignored designations are still visible in the curation interface but are greyed out.
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- 13 Nov, 2014 3 commits
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Keith Jolley authored
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Keith Jolley authored
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Keith Jolley authored
It can take a few seconds to create the cache tables - if the table is dropped and recreated this can result in an error if somebody is querying via the web interface at that moment. Instead, we can create a new table named with a random suffix, then drop the old table and rename the new one as a single transaction.
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- 12 Nov, 2014 1 commit
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Keith Jolley authored
Not just all loci, or all variable loci.
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- 11 Nov, 2014 3 commits
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Keith Jolley authored
Use Datastore::run_query instead and add warning to deprected method as it will be removed.
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Keith Jolley authored
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Keith Jolley authored
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- 04 Nov, 2014 1 commit
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Keith Jolley authored
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- 03 Nov, 2014 1 commit
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Keith Jolley authored
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- 31 Oct, 2014 3 commits
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Keith Jolley authored
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Keith Jolley authored
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Keith Jolley authored
There is still information that can be shown. List locus curators.
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- 30 Oct, 2014 1 commit
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Keith Jolley authored
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- 29 Oct, 2014 2 commits
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Keith Jolley authored
List::MoreUtils::none changed with this." This reverts commit b6d9cd99. This change was likely to kill a lot of the PubMLST mirror sites.
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Keith Jolley authored
The behavior of List::MoreUtils::none changed with this.
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- 07 Oct, 2014 1 commit
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Keith Jolley authored
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- 06 Oct, 2014 2 commits
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Keith Jolley authored
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Keith Jolley authored
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- 25 Sep, 2014 1 commit
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Keith Jolley authored
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- 24 Sep, 2014 1 commit
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Keith Jolley authored
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