diff --git a/data/klebsiella_PE1.fq b/data/klebsiella_PE1.fq new file mode 100644 index 0000000000000000000000000000000000000000..96690349ffd63d67f61f327d0c2fbaa13fb3f929 --- /dev/null +++ b/data/klebsiella_PE1.fq @@ -0,0 +1,40 @@ +@SRR1222430.1 1 length=251 +GCCCGCGAAGCGGAGCTGGCCGCCTGCAAAGGCCGTTCGCGCTCGCTGTCGCTGGATCTGTACGCCCAGTGGCGCTGCATGGAGGACAACCACGGCAAGTGGCGCTTCACCTCGCCGACCCATACCGTGCTGGCCTTCGCCCAGGCGCTGAAAGAGCTGGCGCAGGAGGGCGGCGTCAGCGCTCGCCATCAGCGCTACCGCAACAATCAGCGCCGTCTGGTGGCAGGGATGCGCGCGCTCGGCTTCCGGCC ++SRR1222430.1 1 length=251 +CCCCCCCCCBBCGGCGGGGG@GGGGGHHHGHBHH@GGHGGGGGGGGG@GHGHGGGHHHHHHHHHGGGGGHHHFCGGGGHHHGHHGGHHHHGGGGCCGGGGHFFGGGGGHHHHHGGGGGGCGHHHHGGGGGGGGGGGGGGGGGGAEGGFFFFFFFFFFFFFFAFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEDFFFFFFFFFFF:DA;CCFFBBFDAFFFAFFFFFFFFA-9A>DFFFFFBFFB +@SRR1222430.2 2 length=250 +AGAAATTCGCCATCAGAATAAAAACCTCATATGCACATTTTCTTGTTATTGCACAGCCTGTGCCACTTTAGCGCCAGCCTCTCCGGCAATCGTGGAGAAATTAAGGAGATAGTGTAATTTATCATGTTGCTTTTGCCGTATCGTAAAGAAACCTCGAGCTTTCCTGCCAGCAGGTAGCGAGTCTGCTTCGTCACCGCAGACCGGCGCATTATCCCTTGCCGGTGTGAAACCTCATTTCATTTAAGTCAAA ++SRR1222430.2 2 length=250 +BBBBBFFFBBBBFGGGGGGGGGHHGGHHHHHHHHGFGHHHHHHHHGHHHFFFHHFHHHHHHEHGFHHHFGFGFGGGEGGFH@@HGCGGGHHGHHGGHFAFHHHEGFHHGGHHFHFHHHHHEHHHHHHHHHHHGHHHGGGGHHGHFGGFDGFGFHGEGFCDHGGHHHHHHHGHHEHHGHGGGGHGFHHEHGHGGGGDFGGGHHGADA?DBGGGGGGFFFFBBFFFFFFFFFFFFFFFFFBFFFFFFFFF/B +@SRR1222430.3 3 length=236 +CAAACACCTGACGCGGTTCCAGCAGGTACTCCTGCACGCCAATTTCCGGGCGGGCAGTAAAGCGCTGTTTGCAGCCCGTCTGGTGCAGGCGCCCCAGATAGCGGCCAACCCATTCCATCTGATCAAGGTTATCCGCTTCGAACTGACGACCGCCAAGGCTTGGGAAAACGGCAAAGTAGAATCCCTGATGCTGATGAAGCGTGCTGTCATTAAATAAGAGCGGCGCAGCAACGGGC ++SRR1222430.3 3 length=236 +CCCCCFFCFFFFGGGGGGGGGGHHHHHFGHHHHHHHHGGGGGHHHHHGGGGGGGGGGHHHHHHGGGGGHHHHHHHHGGGGHGHGHHGGHGGGGGGGGHHHHHGGGGGHGGGGHHHHGHHHHHHHHHHHHHHHHHGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFABF +@SRR1222430.4 4 length=249 +GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAACCATGGCTCGGCGCCCAGGGCATCGTCCCGCAATCCGATGACTGGATGGTCGTCGCCAAAGGCACGATCAACGTCCAGCCTGCGGTGGTGATTGCCATCACTGGCACCTTCCAGGGCGGCAGTATTGGCGAAGTGTCCGGCCTCAAAATTGCCGCCGCCATGGTGCTGGCGGCGGATG ++SRR1222430.4 4 length=249 +1AAA1AAA1F>1BGEFG0ACFGBCGHEHCAFGFDA1GAEG2FGFAFFCEFGCA/GFD211DGF01FBGA>////B1000B@>///>E/?/?//F0E//?///>BC10<?B/?12?/??1/11>//<AA.AF0<.<<..C..</...../::G.:--;;.99B000099CF090;/9/09F09/90/9--9-9-B///9/9-;@--/;//-----9/9:FF/9//--9;>---/9/99;//9----9--- +@SRR1222430.5 5 length=208 +CGCTTATGGAAATGTGACGATCGTCACCGTTCCGCCCCGGGAGAACGGGGCGGAAAAAGAGGGCGATTTTAGTGCCAGCAGAAGTGATGAACCACCTGGCTAATCAGCTCCCGGGTCGGCTTGATAAAGCGCGTCTCCAGATACTCGTCAGGCTGATGGGCCTGATTGATGGAGCCCGGGCCGAGAACCAGCGTCGGACACAGCGTCT ++SRR1222430.5 5 length=208 +CCDDCCFFFFFFGGGGGGGGGGGHHHGHGHGHHGGGGGGGGGGGHHGGGGGGGGGGHHGGHHGGGGGHGHHHHHHHHHGHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHGGGGGGGGGGGGHHHHHHHGGGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF +@SRR1222430.6 6 length=192 +GAGAAACATCCTGCCAAGCCAAACTTTAAAGCGCCGAGGGATAATGGCGATGGTACCTACATGGTGGAGTTTGAATTCGATGGCCGTCATTACGCCTGGTCTGGTGCCGCCGGTAATCGGGTAGAGGCAATGCAATCTGCCTGGAGTGCCTACTTCAAGTGACAAAAAGGCCACAGGTTATCGCCTGTGGCC ++SRR1222430.6 6 length=192 +BBBBBFFFFFFFGGGGGGCGGGHHFHHHHFHHGGGGGGGGGHHGHFHGGEEGGFHGHGHHHHHHEGGHHHHHHHHHHHGHGHGHHGGGGGHHHGGEHHHHHFHHHHHHGGGGGCGGHHGGCGFGFFHGGHFHHHGHFHHHHHHHHGFFHFGHHHHHHHHHHHHHHHHHGDHHHGEHHHHHGGGGGGGGGGGG +@SRR1222430.7 7 length=251 +CGCAGCCGGTAGTGGTTTTCGGGAGAGGACAATTTTTTGATATCCGAGATAGGTGAAGCTTTATCATCCATCTTCTCCAGCCTGGATTTAATGCGGCTCTTATACCGAGTATCGATTTTAGAAAATTGCTTATCTTCCGTTTTTGACCAGACAATTTTCATCCGTACCTCCACTGTACGCCCACACAAAATATAAGGAAATAATAAGACTATTAGATAAATTCCGAATTTCTTATGGGGTACTGTAGAGCG ++SRR1222430.7 7 length=251 +BBBBBDBBBDBBGGGGGGGGGGGGGGGGHHHHHHHHHGGGHHHHHGGGGGHHHHHHGHHHHHHHHHHHHHHHHHHHHGHHHGHHHHHGHHHHGHGGGGGHHHHHGHGGFFHHHGHHHGHHHHHHHHHHHHHHHHHHGHGHHHGGGGHHHHHGGHHHGHHHHHHGGHGGHHHHHHHHGHHGGGGFGGGGFHGGGGGGGGGGGGGGGGGGEFGGGGGGFGGGGGGGGGGGG/BFFFFFBFDDDFFFFFFFF/@ +@SRR1222430.8 8 length=250 +CGCGCGGGTAATTTTCAGCTGTGTCCCCGGACCGGCGACAAACCCCATGCAGTTAATCACGGTGGTGAATCCACGAAACTGATCGGCCAGCGTCTCCATGGCGCTACCGGCGATGTCGACGGCGAGGAAGGTGGCTCCGGCGTCGGCCAGCGCCTGATGGTTTGCCGACCGCAGCTGGCCGGCTTCATCCCAGGCCGCCGGCGAGACGATGACCGAGACCGTGCCCTGGCGCTCGATTACCGCAGGCACC ++SRR1222430.8 8 length=250 +AAABBBBB>ACFGGGGGDGGGGHHGGHHGGGGG0EGEGGGGHGGGGGHHHHHHFHHDHHHEDFGGEGHFHHHHHGGGGGHHHHHCGCFGHGGDFGHHHHHEHGGGFGHGCCGGGGCFHEGGGGG?CGGGGG;FEFGGGFFFFDFCCDD=AEFFFFFFFFFBFFFFFFFFB=DABCFFFFFFFFFFFFFFFFFF.EFFFFCFFFAAAFFFFF/BBB;9@DFCFF?AFFFEFAA9DF-9BDFFDFFAADFFF +@SRR1222430.9 9 length=250 +CGGTGCGGCAACTGGAGACGCTGGCCGCGACCCGGGTCATGACGGACGGTAAAAGCGAAACGGTGCTGACCGGAAATCTGATTGTGGCGAAATTCAACCACGACACGAACCGTAACCAGGAACCTCAGATACACACCCATGCCGTCGTCATTAACGCCACGCAGAACGGGGACAAGTGGCAGTCTCTTGGCACTGATACAGTCGGGAAAACGGGCTTTATCGAGAATGTGTACGCGAACCAGATAGCCTT ++SRR1222430.9 9 length=250 +BCCBBBCDEDCDGGGGGGGGGGGGGHGGGGGGGGGGGGHHHHHGGGGGGGHGHHHHGGGGGGGEGGHHHHHGGGGGHHHHHGHHHHGHGGGGHHHHHHHGGGGGGGGGGGGGGHGGHHHGHHHGHHHHGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFHFFFHFFFFFDFFFFAFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFF +@SRR1222430.10 10 length=251 +CGTCTCGCTGACCAGGGCGTTTTTCGCCTGATTGCGCGACATCACCAGCAGGTCGTTGATCATGCTGTCCAGCCGGTGCGCTTCGGTTTCGATACGCTCCAGCTCCTTGCTCTCTCCGCTGCGGCGACGCAGCAGGGCGGTACCCAATTGCAGGCGCGTAAGCGGCGTGCGCAGCTCGTGCGAGATATCGGACAGCAGCCGCTGCTGGCTGGTCATCATCCGCTCCAGGGCCGTCACCATCTGGTTAAAAC ++SRR1222430.10 10 length=251 +BBBBBFFBBBBFGGGGGGGEFGGGHGGGGHHHHHHGGGGGGGHGHHHHHHHH1FEEGHHEHHHHHHHHHHHHGGGGGGGGGGGGGGGGGHGGGHGGGGGGHHHHHHHHHHGHHHHHHGGGGGGGGGGGGGGGGFGEGGGGGGGGGGGFFFFFFFFFFFCFFFFFFFFBCFFFFFFFFDFFFADFFFFFFF;ABFFFFFFFFFFFFFFFFFFFBFFBFFFFFFFFFFFFF??DCFFFDFBFFBFFFFFBFF/ diff --git a/data/klebsiella_PE2.fq b/data/klebsiella_PE2.fq new file mode 100644 index 0000000000000000000000000000000000000000..c21376294dba6a4210cf76c7d60ce316ef617692 --- /dev/null +++ b/data/klebsiella_PE2.fq @@ -0,0 +1,40 @@ +@SRR1222430.1 1 length=250 +CGATGCTGCGCTGCATCAATAAGCTGGAAGAGATCACCAGCGGCGATCTGATTGTCGATGGTCTGAAGGTCAACGACCCGAAGGTGGACGAACGTCTGATTCGTCAGGAAGCCGGGATGGTTTTCCAGCAGTTTTATCTGTTCCCGCACCTCACGGCGCTGGAAAACGTGATGTTTGGCCCGCTGCGGGTACGCGGCGCCAGCAAGCAGGCGGCGAGTGCAGGCTATCGTCGAGCAGCGGCCGGAAGCCG ++SRR1222430.1 1 length=250 +CCCCCCFFFCCCGGGGGGGGGGHHHHHHHHGHHHHHHHHHHGGGGGGGGHHGHHHHGHGHGHHHHHHHHHFHHHGGGGGGGGGGBFFHHGGGGGGHHGGHHHGHGGGHHHHHHGGGGGGGFGHGHHHHHHHHHGHHHFHHHHHHDFGGGGHHHHHGGAGGGGGGGGGGGGGGGFGGGFFFFFFFFFFFA=@FDF-BFFFFFFFFFFFFFEDFBDFFF-:FFFFFF/BFFFEFFFFFFFFFFF;--:DEFF +@SRR1222430.2 2 length=251 +AGAAATTCGCCAGGGTGATCAACGTCTCATCGTCGGCGAGGGTCAGCGCCTGCGCGGGACAGTTTTCCACACAGGCCGGCCCCGCCTCGCGGCCCTGGCATAGATCGCACTTGTGCGCGCTGGCTTTCACCAGGCCTGCGGCCTGCGGCGTCACCACCACCTGCATCACCCCGAACGGGCAGGCCACCATGCAGGATTTACAGCCAATGCATTTCTCCTGACGGACCTGAACGCTGTCGCCGGACTGGGCG ++SRR1222430.2 2 length=251 +>1>AAFFF@11AEGGFFCGGGGGFGHFH2FF1F00EEE/@AEE0FGGFGEGGHGGCGC?EEFHEFEEHDF1EECHEFE/@@/BCCCFGAC@CC@C.CEGFHFHGHFHCEC?FH;CC?CG@@?-AF.BB0BFGF?E./EF;@?;AFF@<-@@??BFF?F-:A?BF999BBBF@@?@@@F-;@B@FF-A-9FF/BFFE/F//B/BBEFBFFFFF/BFFFFFFFEB?-@=B-/BBF--:;/A-B>--;>?EFE9 +@SRR1222430.3 3 length=236 +GCCCGTTGCTGCGCCGCTCTTATTTAATGACAGCACGCTTCATCAGCATCAGGGATTCTACTTTGCCGTTTTCCCAAGCCTTGGCGGTCGTCAGTTCGAAGCGGATAACCTTGATCAGATGGAATGGGTTGGCCGCTATCTGGGGCGCCTGCACCAGACGGGCTGCAAACAGCGCTTTACTGCCCGCCCGGAAATTGGCGTGCAGGAGTACCTGCTGGAACCGCGTCAGGTGTTTG ++SRR1222430.3 3 length=236 +?BBABBFBBFFFGGGGGGGGGGHHHHHHHHHHFHHHGGGGGHHHHHHHGHHHHHGHGHHHHHHHGHFEGGHGHHHHHHGGHHHHHGGGEGGGHGHHHGHHGGCGGGDHHHHHHHHGHHGHGHHHHHHFHGGGHFGGGGGHHHHEFGGCFGHHHHGGFGGGGGGGGGGGGGGGGGFFFEFFFFFFFBFFFFF=;ABFF/FA:DB;BF.9.BFFFFFFF/AFFFFFABDFFB/9BD.; +@SRR1222430.4 4 length=250 +GCATGGAAAAGGGGTGTGGTGGGGAAAAGGGGAGATCCCTGCTGGAGCCCTACCCCTTAAAAAAAAAAACACAGCACCGGCTGCGTCGGGATACCGTAGCGTATCTCTACCGCCGCCATCACCCGCGCGCGTGCCATTTGGTCACCCAACAATGTGCCCATATGTCCTCCCACAGATGAGTACGTGATGCCAATCCTCATCGCAGAATAGCCTCTCAGTGGCCCCTTTGTAACCCACATACCCTACTTGG ++SRR1222430.4 4 length=250 +>>11111111111A100A0AAEA00A0A0//////011B11/1B10B0A/0B000/B0BB111/>/E////0?0/<0<////</<///////0??///.>-...0=1<=1D----::-::00/.----------;/:;;//-:/;/--9---;/9//////;/99/////-----9///;///----///9;9//-/9////-;--///////-//////;---9--/////:/----////;/--//// +@SRR1222430.5 5 length=208 +AGACGCTGTGTCCGACGCTGGTTCTCGGCCCGGGCTCCATCAATCAGGCCCATCAGCCTGACGAGTATCTGGAGACGCGCTTTATCAAGCCGACCCGGGAGCTGATTAGCCAGGTGGTTCATCACTTCTGCTGGCACTAAAATCGCCCTCTTTTTCCGCCCCGTTCTCCCGGGGCGGAACGGTGACGATCGTCACATTTCCATAAGCG ++SRR1222430.5 5 length=208 +DDDDDDCDDFFFGGGGGGGGGGHHHHGGGGGGGGGGHGHHHHHHHHHHHGGGHHHHHHHHHHGGGGHHHHHHHHHGGGGGGGGHHHHHHHGGGGGGGGGGGGHHHHHHHHHHHHGHGGGHHHHHHHHHHHHHHHGHHHHHHHHHGGGGGHHHHHHHHGGGGGGGGGGGGGGFGGFFFFFFFFDFFFFFFFFFFEFFFFFFFFFFFFFF +@SRR1222430.6 6 length=192 +GGCCACAGGCGATAACCTGTGGCCTTTTTGTCACTTGAAGTAGGCACTCCAGGCAGATTGCATTGCCTCTACCCGATTACCGGCGGCACCAGACCAGGCGTAATGACGGCCATCGAATTCAAACTCCACCATGTAGGTACCATCGCCATTATCCCTCGGCGCTTTAAAGTTTGGCTTGGCAGGATGTTTCTC ++SRR1222430.6 6 length=192 +>3ABABF?ABBBGGGGEGGGFFHFFFHGHGGHFHHHHHHHHHFHHHHHHGGGHHHGGFFGFFDFHHHFGHHHHHGGGGGFGGFGG?EGGGHEFFEHHFHGDDFAGHFGGGFGFBEHHHHHHHBHHGHGEFHHFGFHGFGFHHFHAEGGGGFFHGHHHGGGGGGGGGGGGGGGGGGGGGGGGGGFFGGGGFB9 +@SRR1222430.7 7 length=251 +TGGCGGATTGAACGCCTGATCGCACATTTTCTGCAAGCCTCTGTCGCCCGGCAGAGGCCTTCCCGCGCCGCCTCGACGGGTTGCGTTTTGCCTCTTACCTGCGTTTTTTCTCCGCTCTACAGTACCCCATAAGAAATTCGGAATTTATCTAATAGTCTTATTATTTCCTTATATTTTGTGTGGGCGTACAGTGGAGGTACGGATGAAAATTGTCTGGTCAAAAACGGAAGATAAGCAATTTTCTAAAATCG ++SRR1222430.7 7 length=251 +BBCBBDBCCFFFGGGGGGGGGGGGGGHCFHHHHGHHHHGHHHHHHGHGGGGGGCECAEAGHHHHEGGFFFGGGGEGGFCCGFCADADCGHGHHHHHHHHHHGDDGFGGGGFHHDDGGHFGHFGHHHHEGHHGHHHGHHHGFGCFHHFGGFFFGGGGGGGGGGGGGFGGFGGGGGGGGGFBF?C.E=DFFDFFBFFE.AFFD.DDDFBFFFFBBFFEBFBBBBFEFFFFEBAFFFFEFFFF/FFBFF/9FF. +@SRR1222430.8 8 length=251 +TATTGGTGCTGGGAGCGGGACAACTGGGCGCCGCCGTTCTCGATGCGCTGGTGCCTGCGGTAATCGAGCGCCAGGGCACGGTCTCGGTCATCGTCTCGCCGGCGGCCTGGGATGAAGCCGGCCAGCTGCGGTCGGCAAACCATCAGGCGCTGGCCGACGCCGGAGCCACCTTCCTCGCCGTCGACATCGCCGGTAGCGCCATGGAGACGCTGGCCGATCAGTTTCGTGGATTCACCACCGTGATTAACTGC ++SRR1222430.8 8 length=251 +AA?AAFFBFFFFGGCEGGGCEFGFHCEDGEGGGGGGEAFFFFB35>0EEGGGHGFFFCEGEEFFHGHG?EGCFG/E</EGGFDADB/CCDHDFGHHGGGCDGGC-:DDGEC./CGB:0C9-B@BEEBBBBGAB;;??=FFFFFFFFFFBB?BBFF<BB??BB?BBBEFFFFBBFFFFBBBBB??-ADB?DFBB9>DF-9@.A/BFFEADBDA?DFBB?@AFBB/FDAEAA/FFFFFFFAFAEEFFFF9BF/ +@SRR1222430.9 9 length=250 +AAGGCTATCTGGTTCGCGTACACATTCTCGATAAAGCCCGTTTTCCCGACTGTATCAGTGCCAAGAGACTGCCACTTGTCCCCGTTCTGCGTGGCGTTAATGACGACGGCATGGGTGTGTATCTGAGGTTCCTGGTTACGGTTCGTGTCGTGGTTGAATTTCGCCACAATCAGATTTCCGGTCAGCACCGTTTCGCTTTTACCGTCCGTCATGACCCGGGTCGCGGCCAGCGTCTCCAGTTGCCGCACCG ++SRR1222430.9 9 length=250 +ACCCCFFFFFFFGGGGGGGGGGHHHHHHHGHHHGHHHHHGGHHGHHHGGGGGHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHGGHHGHHGGGGGGGGGGHHHHGGGGGGGGHHHGGGGHHHHHHHHGGHHHHHHHHHHGGHGGGGGHHGGGGGFGGFHHHHHGGGGHGFHHHGGFFGGGGGGFGGGGECGGGBGFGFFFFFBDFFFFFFFFFFFFEFFBFFFFFFFFFEFFFF.FFBFFFFFFCA;9>B +@SRR1222430.10 10 length=251 +CAACCAGGATTCCCCGCCGATGAAGTCGCCCAGGGCAACCTGCGCCAGCATCCGGAGCTGGAAGCCGGGCCGCAGGAGTTTTTAGCCGCTGGCGCCAGTTTTAACCAGATGGTGACGGCCCTGGAGCGGATGATGACCAGCCAGCAGCGGCTGCTGTCCGATATCTCGCACGAGCTGCGCACGCCGCTTACGCGCCTGCAATTGGGTACCGCCCTGCTGCGTCGCCGCAGCGGAGAGAGCAAGGAGCTGGG ++SRR1222430.10 10 length=251 +CCCCCCCCCFFFGGGGGGGGFGHHHHHGGGGGHGGGGGHHHHFGGGGGGGGHFFGFGGHHFCGHHFGGGGGGGGCCFGHEHHFHHHGGGGGGGGGGGF?FFFHFHHGHHHHHFGHHGGGGGHFGCGHCG?CFFHHFHFGAEGGGGGGGGGGGGGFFFGGDDDFFFFFFFFFADFFDBBDD=B=AAFF@D./EFCFFBEFFFFFFFFABFFF-CD;FEF/;@AFFFF=;BDFFFF=;.EFFFFF..AE.BB.