diff --git a/NEWS b/NEWS index c776d85e79f9c02caf7619e77a71a0eec551a778..7d12cce10a6ed496d6a84a228b4b51fc4f414b33 100644 --- a/NEWS +++ b/NEWS @@ -1,5 +1,18 @@ +New in version 1.8 + * Bugfix: The "process PE separately option" was only taken into account when calculating the median coverage. +During original parsing for determining which reads are "undefined", PE were considered as single so the -m option for PE was not useful. +This is now fixed. + * Bugfix 2 : when specifying -q 0 option (ie indicating that you do not want to take the nucleotide's score into account), nucleotides +with score =0 were considered as errors and k-mers containing them were not taken into account. This is now fixed. Indicating -q 0 takes all (non 'N') +nucleotides into account. + * -p option now takes arguments: + 0 : PE are processed as single + 1 : PE are processed separately. A PE is removed by the low filter if R1 and R2 have coverage below kappa_prime. + 2 : PE are processed separately. A PE is removed by the low filter if if R1 or R2 have coverage below kappa_prime. + + New in version 1.7 - * -m optionnow also available when PE reads are processed separately. + * -m option now also available when PE reads are processed separately. New in version 1.6 * code refactoring (no impact for the user)