From 4e267b4875f2899420e572cd31753fb4804cf085 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Mon, 26 Apr 2021 12:25:18 +0200
Subject: [PATCH] bug fix k-mer length was not read properly from user input
---
src/ROCKparams.cpp | 1 +
1 file changed, 1 insertion(+)
mode change 100644 => 100755 src/ROCKparams.cpp
diff --git a/src/ROCKparams.cpp b/src/ROCKparams.cpp
old mode 100644
new mode 100755
index ee2dd57..bdc1833
--- a/src/ROCKparams.cpp
+++ b/src/ROCKparams.cpp
@@ -291,6 +291,7 @@ void ROCKparams::initFromMainOptsArgs(int argc,char ** argv) {
cout<<"Bad value for k. Must choose k so that 0<k<=32."<<endl;
usage(EXIT_FAILURE);
}
+ qual_thres.k=k;
break;
case 'n':
nb_k_mers=atoi(optarg);break; // number of distinct k-mers
--
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