From 646fb84044c12c8ae4b8c20bf8cef5a57bf37b55 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Thu, 24 Mar 2016 16:25:33 +0100
Subject: [PATCH] added exception for debug
---
src/read_utils.cpp | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/read_utils.cpp b/src/read_utils.cpp
index c13a6cc..0639f41 100644
--- a/src/read_utils.cpp
+++ b/src/read_utils.cpp
@@ -77,12 +77,12 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [],
f_id2=fid_stored &mask_fid;
unsigned long offset1=j*UINT_MAX+sr.read_a1;
- getFqRecord(fq_files_be,f_id1,offset1,dna_seqs[0].fq_record_buf);
try {
+ getFqRecord(fq_files_be,f_id1,offset1,dna_seqs[0].fq_record_buf);
processFqRecord(p_dna_seqs);
} catch (int e) {
cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl;
- cout<<"pb reading at offset1="<<offset1<<endl;
+ cout<<"pb reading/seeking at offset1="<<offset1<<endl;
cout<<"got: "<<endl;
cout<<dna_seqs[0].fq_record_buf<<endl;
}
@@ -93,7 +93,7 @@ void getDNASeqstr(FqBaseBackend* fq_files_be [],
getFqRecord(fq_files_be,f_id2,offset2,dna_seqs[1].fq_record_buf);
} catch (int e) {
cout<<"j="<<j<<" sr content: a1="<<sr.read_a1<<" a2= "<<sr.read_a2<<endl;
- cout<<"pb reading at offset2="<<offset2<<endl;
+ cout<<"pb reading/seeking at offset2="<<offset2<<endl;
cout<<"got: "<<endl;
cout<<dna_seqs[1].fq_record_buf<<endl;
}
--
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