diff --git a/test/rock_mem.sh b/test/rock_mem.sh index d4956a709b561544921272c72143d2ead21d9b0b..9a0a2d9f790b41485f0301163a55ba75ad572179 100755 --- a/test/rock_mem.sh +++ b/test/rock_mem.sh @@ -448,6 +448,7 @@ rm -f tmp/klebsiella_5_2_2_qual_thres.fq echo " " echo "##################################################################################" echo "testing ROCK with a quality score threshold for nucleotides, PE processed separately (lenient filter) and -m option" + ../src/rock -C 100 -c 1 -l 2 -q 2 -m 2 -p 2 -o ${srcdir}/data/iofiles.args/output_files_2_PE_separated_lenient.txt ${srcdir}/data/fastq.raw/klebsiella_6_1_bad_scores.fq,${srcdir}/data/fastq.raw/klebsiella_6_2_bad_scores.fq >/dev/null || exit 210 [ -f "tmp/klebsiella_6_1_bad_scores.undefined.fq" ] || exit 211