From bc0eb8fc577bb8fb284d7ee6b4ba589c792f5427 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Wed, 12 Mar 2025 11:51:37 +0100
Subject: [PATCH] fixed bug : memory deallocation of cur_fq_record. TODO : take
some time to make something cleaner on this topic
---
src/FqBaseBackend.h | 11 +++++------
1 file changed, 5 insertions(+), 6 deletions(-)
diff --git a/src/FqBaseBackend.h b/src/FqBaseBackend.h
index 7324cec..3ffe196 100644
--- a/src/FqBaseBackend.h
+++ b/src/FqBaseBackend.h
@@ -136,7 +136,10 @@ public:
free(o_buf);
o_buf=NULL;
}
- delete cur_fq_record;
+ if (cur_fq_record !=NULL) {
+ delete cur_fq_record;
+ cur_fq_record=NULL;
+ }
}
void openInputFile(char * ficname, unsigned char id);
@@ -147,11 +150,7 @@ public:
void openOutputFile();
void writeToOutput(const unsigned long&);
void closeOutputFile();
- /*void setUndefFile(char * ficname);
- void openUndefFile();
- void writeStrToUndefFile(char * start_in_buf, int len);
- void writeToUndefFile(const T_buf_info& buf_info,const int& addCR=0);
- void closeUndefFile();*/
+
static void setQualThreshold(const FasqQualThreshold& a_qual_thres){
FqBaseBackend::qual_thres.min_correct_k_mers_in_read=a_qual_thres.min_correct_k_mers_in_read;
--
GitLab