From fdbad95b44b7cf1ee7f9a80fd1c6512f09cb8bb7 Mon Sep 17 00:00:00 2001 From: Alexis CRISCUOLO <alexis.criscuolo@pasteur.fr> Date: Mon, 9 May 2022 15:42:18 +0200 Subject: [PATCH] Update README.md --- README.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 462ebcf..8130349 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,6 @@ +[](http://perso.crans.org/besson/LICENSE.html) +[](https://doi.org/10.21105/joss.03790) + # ROCK _ROCK_ (Reducing Over-Covering K-mers) is a command line program written in [C++](https://isocpp.org/) that runs an alternative implementation of the _digital normalization_ method (e.g. Brown et al. 2012, Wedemeyer et al. 2017, Durai and Schulz 2019). @@ -6,7 +9,7 @@ Given one or several [FASTQ](https://en.wikipedia.org/wiki/FASTQ_format) file(s) _ROCK_ can therefore be used to reduce and/or homogenize the overall coverage depth within large sets of HTS reads, which is often required to quickly infer accurate _de novo_ genome assemblies (e.g. Desai et al. 2013, Chen et al. 2015). _ROCK_ can also be used to discard low-covering HTS reads, as those ones are often artefactual, highly erroneous or contaminating sequences. -For more details, see the associated publication: Legrand et al. (2022) [](https://doi.org/10.21105/joss.03790) +For more details, see the associated publication: Legrand et al. (2022). ## Compilation and installation -- GitLab