From 0fb36a15dadef7b9e5241c327dad3273a7aa8591 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Mon, 17 Mar 2025 17:56:26 +0100
Subject: [PATCH] next part of the fix for the same pb as the previous one
---
phagetermvirome/readsCoverage_res.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/phagetermvirome/readsCoverage_res.py b/phagetermvirome/readsCoverage_res.py
index bc3d3c5..ba94792 100644
--- a/phagetermvirome/readsCoverage_res.py
+++ b/phagetermvirome/readsCoverage_res.py
@@ -214,13 +214,12 @@ class RCCheckpoint_handler:
def __init__(self,chk_freq,dir_chk,test_mode=False):
self.chk_freq=chk_freq
self.test_mode = test_mode
- self.start_t=0
+ self.start_t=time.perf_counter_ns()
self.dir_chk = dir_chk
# if self.test_mode == True:
# self.v38_C5 = checkpoint_visitor_38_Cos5()
# self.v11150_C5 = checkpoint_visitor_11150_Cos5()
if self.test_mode==True:
- self.start_t = time.perf_counter_ns()
if os.path.exists(dir_chk):
if not (os.path.isdir(dir_chk)):
raise RuntimeError("dir_chk must point to a directory")
--
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