diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 01e193470b09d1a53891ac99a849b92428ca3526..711c7a29d7b875864e2387f8a86311fe261d63c2 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,10 +1,9 @@ -image: continuumio/miniconda:latest +image: registry-gitlab.pasteur.fr/dsi-tools/docker-images:redhat_ptv before_script: - - conda env create -f PhageTerm_env_3.yml - - conda init bash - - source ~/.bashrc - - conda activate PhageTerm_env_py3 + - poetry install + - poetry shell + - export PYTHONPATH=$PYTHONPATH:./phagetermvirome stages: - tests