From 12e5bca85a2c250bf0164497f6c5512fc5240a25 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?V=C3=A9ronique=20=20LEGRAND?= <veronique.legrand@pasteur.fr>
Date: Fri, 13 Oct 2023 10:50:49 +0200
Subject: [PATCH] Update .gitlab-ci.yml

---
 .gitlab-ci.yml | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 01e1934..711c7a2 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,10 +1,9 @@
-image: continuumio/miniconda:latest
+image: registry-gitlab.pasteur.fr/dsi-tools/docker-images:redhat_ptv
 
 before_script:
-  - conda env create -f PhageTerm_env_3.yml
-  - conda init bash
-  - source ~/.bashrc
-  - conda activate PhageTerm_env_py3
+  - poetry install
+  - poetry shell
+  - export PYTHONPATH=$PYTHONPATH:./phagetermvirome
 
 stages: 
   - tests
-- 
GitLab