From 8ac42f86a2b8c93410ec2c1d4a2203ed2b307ce7 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <vlegrand@pasteur.fr>
Date: Tue, 25 Mar 2025 16:28:32 +0100
Subject: [PATCH] added trace to have a n idea of the time needed to retrieve
the number of reacors in the input fastq file
---
phagetermvirome/IData_handling.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/phagetermvirome/IData_handling.py b/phagetermvirome/IData_handling.py
index 8c68a05..dc7d31a 100755
--- a/phagetermvirome/IData_handling.py
+++ b/phagetermvirome/IData_handling.py
@@ -302,6 +302,7 @@ def totReads(filin):
d=d/1000000000
d=d//60
print("spent ", d," minutes to get the number of reads from input file")
+ print("found ", line," lines")
return seq
### SEQUENCE parsing function
--
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