From 9edd1e8bf162165d5438dd77890f6fb2bdee67d1 Mon Sep 17 00:00:00 2001
From: Veronique Legrand <veronique.legrand@pasteur.fr>
Date: Thu, 27 Mar 2025 11:18:15 +0100
Subject: [PATCH] fixed reading of data; previous modif was done too chickly
---
phagetermvirome/IData_handling.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/phagetermvirome/IData_handling.py b/phagetermvirome/IData_handling.py
index b75abe5..ec4cbf4 100755
--- a/phagetermvirome/IData_handling.py
+++ b/phagetermvirome/IData_handling.py
@@ -294,8 +294,10 @@ def totReads(filin):
filein = open(filin, 'r')
line = 0
with io.BufferedReader(filein, buffer_size=bufsize) as buffered_f:
+ for l in buffered_f:
+ line+=1
#while filein.readline():
- line += 1
+ # line += 1
seq = float(round(line / 4))
filein.close()
end_t = time.perf_counter_ns()
--
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