diff --git a/README.txt b/README.txt index 5be897fbdc4d1f4d054162f64a0d0933623dd739..49afe953fdea53c4db1dd9276c0a2eeed75298b7 100644 --- a/README.txt +++ b/README.txt @@ -7,7 +7,7 @@ PhageTerm.py - run as command line in a shell VERSION ======= -Version 3.1.0 +Version 4.0.0 INTRODUCTION @@ -35,11 +35,18 @@ Since version 3.0.0, PhageTerm can work in 2 modes: - mono machine mode (parallelization on several cores on tne same machine). - multi machine mode (parallelization on several machines, using intermediate files for data exchange). The default mode is mono machine. +Version 3.0.0 up to version 4.0 work with python 2.7 + +Since version 4.0, PhageTerm works with python 3.7 + + PREREQUISITES ============= +For version 3.0 up to version 4.0 (not included) + Unix/Linux - Python 2.7.X @@ -52,12 +59,30 @@ Unix/Linux - reportlab 3.3.0 A conda virtualenv containing python2.7 and all dependencies is provided for convenience so that users -don't need to install anything else than miniconda. +don't need to install anything else than miniconda or conda. + + +For version 4.0 + +Unix/Linux + +- Python 3.7 +- matplotlib +- numpy +- pandas +- sklearn +- scipy +- statsmodels +- reportlab + +A conda virtualenv containing python3.7 and all dependencies is provided for convenience so that users +don't need to install anything else than miniconda or conda. + USING THE CONDA VIRTUALENV ========================== -First install miniconda (you don't even need to have python 2.7 installed on your machine for that; +First install miniconda (you don't even need to have python 2.7 or python 3.7 installed on your machine for that; miniconda contains it): https://docs.conda.io/en/latest/miniconda.html Then, create the miniconda environment from the PhageTerm_env.yml file: