@@ -18,6 +18,6 @@ For the tests, I used the files in the data-virome directory.
...
@@ -18,6 +18,6 @@ For the tests, I used the files in the data-virome directory.
My aim was to bench execution time and to see how openCL or another python package could improve things compared to regexp. So, I didnt' bother with Pair-end. I searched for the first 20 characters (default value for seed in phageterm) of each SRR4295172_1_div6.fastq in all the sequences in Contigs_30min.fasta.
My aim was to bench execution time and to see how openCL or another python package could improve things compared to regexp. So, I didnt' bother with Pair-end. I searched for the first 20 characters (default value for seed in phageterm) of each SRR4295172_1_div6.fastq in all the sequences in Contigs_30min.fasta.
Tests ran on myriad-n403 or on my machine (openCL part).
Tests ran on myriad-n403 or on my machine (openCL part).
| original regexp | tryalgo | openCL on imac|OpenCL on myriad K40|
| original regexp | tryalgo | openCL on imac|OpenCL on myriad K40|OpenCL, tars, K80|OpenCL tars M40|OpenCL tars P100|
