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@@ -37,11 +37,10 @@ The binary file also contains a bloom filter corresponding to the selected kmers
 
 ### Matching alleles on sequences:
 ```bash
-	./bin/bpm match -alleles <alleles.fasta> -bin <alleles.bin> -sequences <sequences.fasta>
+	./bin/bpm match -bin <alleles.bin> -sequences <sequences.fasta>
 ```
 Arguments:  
-* **-a** or **-alleles**: A fasta file containing all the alleles that you want to search.
-* **-b** or **-bin**: A binary file containing one kmer of size 32 (to be computed on 64 bits) that represent each allele and the offset inside the sequence. This file also contains a bloom filter corresponding to the selected kmers.
+* **-b** or **-bin**: A binary file generated by the indexing part. This file contains relevant kmers, a bloom filter and the allele sequences.  
 * **-s** of **-sequences**: A fasta file containing the sequence(s) where you want to find the alleles.
 
 ### Tests: