parser.add_argument('--max_gap','-g',type=int,default=0,help="Allow to jump over max_gap nodes during the increasing path search")
parser.add_argument('--barcode_graph','-b',help="Path to the barcode graph corresponding to the d2_graph to analyse.")
parser.add_argument('--optimization_file','-o',
help="If the main file is a d2, a file formatted for optimization can be set. This file will be used to compute the coverage of the longest path on the barcode graph.")
...
...
@@ -55,8 +56,8 @@ def parse_udg_qualities(graph):
""" Compute the quality for the best udgs present in the graph.