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Yoann DUFRESNE
linked reads molecule ordering
Commits
26206cc7
Commit
26206cc7
authored
May 14, 2020
by
Yoann Dufresne
Browse files
bugfix verbose arg
parent
a584b1b9
Changes
1
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Inline
Side-by-side
deconvolution/main/to_d2_graph.py
View file @
26206cc7
...
...
@@ -13,7 +13,7 @@ def parse_arguments():
parser
.
add_argument
(
'--output_prefix'
,
'-o'
,
default
=
"d2_graph"
,
help
=
"Output file prefix."
)
parser
.
add_argument
(
'--threads'
,
'-t'
,
default
=
8
,
type
=
int
,
help
=
'Number of thread to use for dgraph computation'
)
parser
.
add_argument
(
'--debug'
,
'-d'
,
action
=
'store_true'
,
help
=
"Debug"
)
parser
.
add_argument
(
'--verbose'
,
'-v'
,
type
=
bool
,
action
=
'store_true'
,
help
=
"Verbose"
)
parser
.
add_argument
(
'--verbose'
,
'-v'
,
action
=
'store_true'
,
help
=
"Verbose"
)
parser
.
add_argument
(
'--edge_divergence_threshold'
,
'-dt'
,
default
=
0.25
,
type
=
float
,
help
=
'Divergence threshold value to link two udgs in the d2-graph'
)
parser
.
add_argument
(
'--maxclq'
,
'-c'
,
action
=
'store_true'
,
help
=
"Enable max clique community detection (default behaviour)"
)
parser
.
add_argument
(
'--louvain'
,
'-l'
,
action
=
'store_true'
,
help
=
"Enable Louvain community detection instead of all max-cliques"
)
...
...
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