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Yoann DUFRESNE
linked reads molecule ordering
Commits
45503263
Commit
45503263
authored
May 18, 2020
by
Yoann Dufresne
Browse files
figures update
parent
df809076
Changes
5
Hide whitespace changes
Inline
Side-by-side
deconvolution/d2graph/d2_path.py
View file @
45503263
...
...
@@ -16,6 +16,7 @@ class Path(list):
self
.
barcode_order
=
[]
self
.
lcp_per_multiset
=
[]
self
.
barcode_score
=
0
self
.
size_score
=
0
def
append
(
self
,
obj
)
->
None
:
lcp
=
self
.
d2g
.
get_lcp
(
obj
)
...
...
deconvolution/main/fig_gen.py
View file @
45503263
...
...
@@ -20,16 +20,21 @@ def parse_args():
def
main
():
args
=
parse_args
()
data
=
pd
.
read_csv
(
args
.
filename
,
sep
=
'
\t
'
)
print
(
data
)
plot
=
(
p9
.
ggplot
(
data
=
data
,
mapping
=
p9
.
aes
(
x
=
'path length'
,
y
=
'Accuracy'
,
color
=
'experiment'
))
+
p9
.
geom_line
())
plot
.
save
(
args
.
output
+
"_acc.png"
,
width
=
10
,
height
=
3
,
dpi
=
300
)
mapping
=
p9
.
aes
(
x
=
'path length'
,
y
=
'Accuracy'
,
color
=
'experiment'
,
))
+
p9
.
geom_line
()
+
p9
.
themes
.
theme_classic
()
+
p9
.
scales
.
scale_x_log10
()
# + p9.scale_colour_manual(values=["red", "blue", "red", "blue", "red", "blue", "red", "blue"])
)
plot
.
save
(
args
.
output
+
"_acc.png"
,
width
=
6
,
height
=
3
,
dpi
=
300
)
plot
=
(
p9
.
ggplot
(
data
=
data
,
mapping
=
p9
.
aes
(
x
=
'path length'
,
y
=
'Sensitivity'
,
color
=
'experiment'
))
+
p9
.
geom_line
())
plot
.
save
(
args
.
output
+
"_sens.png"
,
width
=
10
,
height
=
3
,
dpi
=
300
)
+
p9
.
geom_line
()
+
p9
.
themes
.
theme_classic
()
+
p9
.
scales
.
scale_x_log10
())
plot
.
save
(
args
.
output
+
"_sens.png"
,
width
=
6
,
height
=
3
,
dpi
=
300
)
...
...
figs/fig1_data.tsv
View file @
45503263
experiment path length Accuracy Sensitivity
5000-2-0 Gb 2 0.47240795939740593 0.9995999199839968
5000-2-0 Gb 4 0.09528 0.9987992795677406
5000-2-0 Gb 10 0.00024 0.996393508314967
5000-2-0 Gb 25 0.0 0.9903536977491961
5000-2-0 Gb 50 0.0 0.9802060189860634
5000-2-0 Gb 75 0.0 0.9699553390174583
5000-2-0 Gb 100 0.0 0.9596000816159967
5000-2-0 Gb 150 0.0 0.9385693671407958
5000-2-0 lcp 2 1.0 0.9985997199439888
5000-2-0 lcp 4 0.9999078001106398 0.9941965179107465
5000-2-0 lcp 10 0.9992509363295881 0.9873772791023843
5000-2-0 lcp 25 0.9987136354640808 0.9722668810289389
5000-2-0 lcp 50 0.9989362833741091 0.9468794182993334
5000-2-0 lcp 75 0.9990801425779005 0.9212342671538774
5000-2-0 lcp 100 0.9988800398208064 0.8953274841869007
5000-2-0 lcp 150 0.9986753017368266 0.8427128427128427
5000-2-1 Gb 2 0.46545819062734944 0.9995999199839968
5000-2-1 Gb 4 0.0897627343620375 0.9987992795677406
5000-2-1 Gb 10 0.0011613438407299876 0.996393508314967
5000-2-1 Gb 25 0.0 0.9903536977491961
5000-2-1 Gb 50 0.0 0.9802060189860634
5000-2-1 Gb 75 0.0 0.9699553390174583
5000-2-1 Gb 100 0.0 0.9596000816159967
5000-2-1 Gb 150 0.0 0.9385693671407958
5000-2-1 lcp 2 0.9997357759379955 0.9977995599119824
5000-2-1 lcp 4 0.9994972769166317 0.9927956774064439
5000-2-1 lcp 10 0.9987872487872488 0.9817671809256662
5000-2-1 lcp 25 0.9980111753006914 0.9545819935691319
5000-2-1 lcp 50 0.9974154399370716 0.9089072914562715
5000-2-1 lcp 75 0.9969027171617626 0.8627689809175801
5000-2-1 lcp 100 0.9976555455365194 0.8161599673536013
5000-2-1 lcp 150 0.9956602603843769 0.7241805813234384
5000-3-0 Gb 2 0.32474102625873286 0.9995999199839968
5000-3-0 Gb 4 0.03035392921415717 0.9987992795677406
5000-3-0 Gb 10 0.0 0.996393508314967
5000-3-0 Gb 25 0.0 0.9903536977491961
5000-3-0 Gb 50 0.0 0.9802060189860634
5000-3-0 Gb 75 0.0 0.9699553390174583
5000-3-0 Gb 100 0.0 0.9596000816159967
5000-3-0 Gb 150 0.0 0.9385693671407958
5000-3-0 lcp 2 0.9995081564062628 0.9907981596319264
5000-3-0 lcp 4 0.9992268439771146 0.9763858314988993
5000-3-0 lcp 10 0.9978075517661389 0.9455019034261671
5000-3-0 lcp 25 0.9980715456561566 0.8729903536977492
5000-3-0 lcp 50 0.9973603778827452 0.7618662896384569
5000-3-0 lcp 75 0.9964375523889355 0.6591555014210313
5000-3-0 lcp 100 0.994793474488025 0.5596816976127321
5000-3-0 lcp 150 0.9910813823857302 0.39806225520511235
5000-3-1 Gb 2 0.32885662431941926 0.9993998799759952
5000-3-1 Gb 4 0.028898254063816978 0.998198919351611
5000-3-1 Gb 10 0.0 0.9945902624724504
5000-3-1 Gb 25 0.0 0.9855305466237942
5000-3-1 Gb 50 0.0 0.9703090284790952
5000-3-1 Gb 75 0.0 0.9549330085261876
5000-3-1 Gb 100 0.0 0.9394001224239951
5000-3-1 Gb 150 0.0 0.9078540507111935
5000-3-1 lcp 2 0.9987888880478389 0.9857971594318864
5000-3-1 lcp 4 0.9968935329003107 0.9655793476085651
5000-3-1 lcp 10 0.9928609402293613 0.9196553796834301
5000-3-1 lcp 25 0.9922175155157127 0.8203376205787781
5000-3-1 lcp 50 0.9913057478666881 0.6806705716016966
5000-3-1 lcp 75 0.9872557349192863 0.5629313844904588
5000-3-1 lcp 100 0.9843342036553525 0.4572536217098551
5000-3-1 lcp 150 0.9775510204081632 0.28633271490414347
5000-2-0 Gb 2 0.47240795939740593 0.9995999199839968
5000-2-0 Gb 4 0.09528 0.9987992795677406
5000-2-0 Gb 10 0.00024 0.996393508314967
5000-2-0 Gb 25 0.0 0.9903536977491961
5000-2-0 Gb 50 0.0 0.9802060189860634
5000-2-0 Gb 75 0.0 0.9699553390174583
5000-2-0 Gb 100 0.0 0.9596000816159967
5000-2-0 Gb 150 0.0 0.9385693671407958
5000-2-0 lcp 2 1.0 0.9985997199439888
5000-2-0 lcp 4 0.9999078001106398 0.9941965179107465
5000-2-0 lcp 10 0.9992509363295881 0.9873772791023843
5000-2-0 lcp 25 0.9987136354640808 0.9722668810289389
5000-2-0 lcp 50 0.9989362833741091 0.9468794182993334
5000-2-0 lcp 75 0.9990801425779005 0.9212342671538774
5000-2-0 lcp 100 0.9988800398208064 0.8953274841869007
5000-2-0 lcp 150 0.9986753017368266 0.8427128427128427
5000-2-1 Gb 2 0.46545819062734944 0.9995999199839968
5000-2-1 Gb 4 0.0897627343620375 0.9987992795677406
5000-2-1 Gb 10 0.0011613438407299876 0.996393508314967
5000-2-1 Gb 25 0.0 0.9903536977491961
5000-2-1 Gb 50 0.0 0.9802060189860634
5000-2-1 Gb 75 0.0 0.9699553390174583
5000-2-1 Gb 100 0.0 0.9596000816159967
5000-2-1 Gb 150 0.0 0.9385693671407958
5000-2-1 lcp 2 0.9997357759379955 0.9977995599119824
5000-2-1 lcp 4 0.9994972769166317 0.9927956774064439
5000-2-1 lcp 10 0.9987872487872488 0.9817671809256662
5000-2-1 lcp 25 0.9980111753006914 0.9545819935691319
5000-2-1 lcp 50 0.9974154399370716 0.9089072914562715
5000-2-1 lcp 75 0.9969027171617626 0.8627689809175801
5000-2-1 lcp 100 0.9976555455365194 0.8161599673536013
5000-2-1 lcp 150 0.9956602603843769 0.7241805813234384
5000-3-0 Gb 2 0.32474102625873286 0.9995999199839968
5000-3-0 Gb 4 0.03035392921415717 0.9987992795677406
5000-3-0 Gb 10 0.0 0.996393508314967
5000-3-0 Gb 25 0.0 0.9903536977491961
5000-3-0 Gb 50 0.0 0.9802060189860634
5000-3-0 Gb 75 0.0 0.9699553390174583
5000-3-0 Gb 100 0.0 0.9596000816159967
5000-3-0 Gb 150 0.0 0.9385693671407958
5000-3-0 lcp 2 0.9995081564062628 0.9907981596319264
5000-3-0 lcp 4 0.9992268439771146 0.9763858314988993
5000-3-0 lcp 10 0.9978075517661389 0.9455019034261671
5000-3-0 lcp 25 0.9980715456561566 0.8729903536977492
5000-3-0 lcp 50 0.9973603778827452 0.7618662896384569
5000-3-0 lcp 75 0.9964375523889355 0.6591555014210313
5000-3-0 lcp 100 0.994793474488025 0.5596816976127321
5000-3-0 lcp 150 0.9910813823857302 0.39806225520511235
5000-3-1 Gb 2 0.32885662431941926 0.9993998799759952
5000-3-1 Gb 4 0.028898254063816978 0.998198919351611
5000-3-1 Gb 10 0.0 0.9945902624724504
5000-3-1 Gb 25 0.0 0.9855305466237942
5000-3-1 Gb 50 0.0 0.9703090284790952
5000-3-1 Gb 75 0.0 0.9549330085261876
5000-3-1 Gb 100 0.0 0.9394001224239951
5000-3-1 Gb 150 0.0 0.9078540507111935
5000-3-1 lcp 2 0.9987888880478389 0.9857971594318864
5000-3-1 lcp 4 0.9968935329003107 0.9655793476085651
5000-3-1 lcp 10 0.9928609402293613 0.9196553796834301
5000-3-1 lcp 25 0.9922175155157127 0.8203376205787781
5000-3-1 lcp 50 0.9913057478666881 0.6806705716016966
5000-3-1 lcp 75 0.9872557349192863 0.5629313844904588
5000-3-1 lcp 100 0.9843342036553525 0.4572536217098551
5000-3-1 lcp 150 0.9775510204081632 0.28633271490414347
\ No newline at end of file
figs/fig1_data_acc.png
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df809076
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45503263
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figs/fig1_data_sens.png
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df809076
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45503263
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