From 51f71fb9f6223fbb0053859523848e1a20fa18ba Mon Sep 17 00:00:00 2001
From: Yoann Dufresne <yoann.dufresne0@gmail.com>
Date: Thu, 2 Apr 2020 11:08:25 +0200
Subject: [PATCH] bugfix: empty clique don't bug anymore
---
deconvolution/dgraph/CliqueDGFactory.py | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/deconvolution/dgraph/CliqueDGFactory.py b/deconvolution/dgraph/CliqueDGFactory.py
index ddbf0e9..5500b00 100644
--- a/deconvolution/dgraph/CliqueDGFactory.py
+++ b/deconvolution/dgraph/CliqueDGFactory.py
@@ -30,6 +30,13 @@ class CliqueDGFactory(AbstractDGFactory):
clq_per_node[node] = []
clq_per_node[node].append(idx)
+ # clq_per_node for nei can be empty because of minimum clique size
+ # So we add singleton cliques for those nodes
+ for node in subgraph.nodes:
+ if node not in clq_per_node:
+ cliques.append([node])
+ clq_per_node[node] = [len(cliques) - 1]
+
# Pair cliques
clq_pairs = set()
for idx, clq in enumerate(cliques):
@@ -37,10 +44,6 @@ class CliqueDGFactory(AbstractDGFactory):
neighbors = list(subgraph.neighbors(node))
# Looks into the neighbors for clique pairing
for nei in neighbors:
- if nei not in clq_per_node:
- print("!!!!!!!!!!!!!!!")
- print(clq_per_node)
- print("!!!!!!!!!!!!!!!")
nei_clqs = clq_per_node[nei]
# Pair useful cliques
for nei_clq in nei_clqs:
--
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