From 697afec30a2f30ebf56b397cbc1349be3a629fa7 Mon Sep 17 00:00:00 2001
From: Yoann Dufresne <yoann.dufresne0@gmail.com>
Date: Thu, 14 Mar 2019 17:04:19 +0100
Subject: [PATCH] louvain for evaluation
---
deconvolve.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/deconvolve.py b/deconvolve.py
index ee9d2d6..97756b3 100644
--- a/deconvolve.py
+++ b/deconvolve.py
@@ -46,8 +46,8 @@ def deconvolve2(G,node):
return # nothing to deconvolve here
for node2,clique_id in cliques.items():
- G.add_node(node+"-MI%d" % clique_id)
- G.add_edge(node+"-MI%d" % clique_id, node2, contigs=(G[node][node2]['contigs'] if 'contigs' in G[node][node2] else ""))
+ G.add_node(node+".%d" % clique_id)
+ G.add_edge(node+".%d" % clique_id, node2, contigs=(G[node][node2]['contigs'] if 'contigs' in G[node][node2] else ""))
# for debugging
G2.nodes[node2]['mi'] = clique_id
@@ -62,4 +62,4 @@ g_nodes = list(G.nodes())
for node in g_nodes:
deconvolve2(G,node)
-nx.write_graphml(G,sys.argv[1]+".deconvolved.graphml")
+nx.write_graphml(G,sys.argv[1]+".louvain-deconvolved.graphml")
--
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