Commit 83e8d871 authored by Yoann Dufresne's avatar Yoann Dufresne
Browse files

correct all rule

parent 91643b3c
WORKDIR="snake_exec" if "outdir" not in config else config["outdir"] WORKDIR="snake_exec" if "outdir" not in config else config["outdir"]
N=[10000] if "n" not in config else config["n"] # Number of molecule to simulate N=[5000] if "n" not in config else config["n"] # Number of molecule to simulate
D=[5] if "d" not in config else config["d"] # Average coverage of each molecule D=[5] if "d" not in config else config["d"] # Average coverage of each molecule
M=[2] if "m" not in config else config["m"] # Average number of molecule per barcode M=[2] if "m" not in config else config["m"] # Average number of molecule per barcode
M_DEV=[0] if "m_dev" not in config else config["m_dev"] # Std deviation for merging number M_DEV=[0] if "m_dev" not in config else config["m_dev"] # Std deviation for merging number
iter=1
# snake_experiments/simu_0_bar_n500_d5_m2.gexf # snake_experiments/simu_0_bar_n500_d5_m2.gexf
rule all: rule all:
input: input:
expand(f"{WORKDIR}/simu_bar_n{{n}}_d{{d}}_m{{m}}-dev{{md}}.gexf", n=N, m=M, d=D, md=M_DEV) expand(f"{WORKDIR}/simu_{{i}}_bar_n{{n}}_d{{d}}_m{{m}}-dev{{md}}.gexf", i=list(range(iter)), n=N, m=M, d=D, md=M_DEV)
rule generate_barcodes_with_dev: rule generate_barcodes_with_dev:
input: input:
......
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