Commit a584b1b9 authored by Yoann Dufresne's avatar Yoann Dufresne

verbose

parent 0f44e223
......@@ -13,6 +13,7 @@ def parse_arguments():
parser.add_argument('--output_prefix', '-o', default="d2_graph", help="Output file prefix.")
parser.add_argument('--threads', '-t', default=8, type=int, help='Number of thread to use for dgraph computation')
parser.add_argument('--debug', '-d', action='store_true', help="Debug")
parser.add_argument('--verbose', '-v', type=bool, action='store_true', help="Verbose")
parser.add_argument('--edge_divergence_threshold', '-dt', default=0.25, type=float, help='Divergence threshold value to link two udgs in the d2-graph')
parser.add_argument('--maxclq', '-c', action='store_true', help="Enable max clique community detection (default behaviour)")
parser.add_argument('--louvain', '-l', action='store_true', help="Enable Louvain community detection instead of all max-cliques")
......@@ -31,6 +32,7 @@ def main():
def dprint(s):
from datetime import datetime
t = datetime.now().strftime('%Y-%m-%d %H:%M:%S')
print(t, s)
dprint("loading barcode graph")
if filename.endswith('.gexf'):
......@@ -65,7 +67,7 @@ def main():
d2g = d2.D2Graph(G, debug=debug, debug_path=debug_path)
dprint("D2 graph object created")
dprint("constructing d2 graph from barcode graph")
d2g.construct_from_barcodes(neighbor_threshold=args.edge_divergence_threshold, clique_mode=clique_mode, threads=args.threads)
d2g.construct_from_barcodes(neighbor_threshold=args.edge_divergence_threshold, clique_mode=clique_mode, threads=args.threads, verbose=args.verbose)
dprint("[debug] d2 graph constructed")
# d2g.save(f"{args.output_prefix}.tsv")
......
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