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Yoann DUFRESNE
linked reads molecule ordering
Commits
ade48191
Commit
ade48191
authored
Aug 28, 2019
by
Yoann Dufresne
Browse files
refactor name to idx
parent
36e8ec7f
Changes
1
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Inline
Side-by-side
deconvolution/d2_algorithms.py
View file @
ade48191
...
...
@@ -21,8 +21,8 @@ def transitive_reduction(d2g):
dg1_name
,
dg2_name
,
data
=
edges
.
pop
(
0
)
# Extract dgs
dg1
=
d2g
.
node_by_
name
[
dg1_name
]
dg2
=
d2g
.
node_by_
name
[
dg2_name
]
dg1
=
d2g
.
node_by_
idx
[
int
(
dg1_name
)
]
dg2
=
d2g
.
node_by_
idx
[
int
(
dg2_name
)
]
# Extract common neighbors
nei1
=
frozenset
(
d2g
.
neighbors
(
dg1_name
))
...
...
@@ -32,7 +32,7 @@ def transitive_reduction(d2g):
# Look for all the common neighbors, if edge must be remove or not
current_dist
=
d2g
[
dg1_name
][
dg2_name
][
"distance"
]
for
node
in
common
:
com_dg
=
d2g
.
node_by_
name
[
node
]
com_dg
=
d2g
.
node_by_
idx
[
int
(
node
)
]
extern_dist
=
d2g
[
dg1_name
][
node
][
"distance"
]
+
d2g
[
node
][
dg2_name
][
"distance"
]
# If better path, remove the edge
...
...
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