diff --git a/data/100_5_2-neighbors_of_molecule_43_95.graphml b/data/100_5_2-neighbors_of_molecule_43_95.graphml new file mode 100644 index 0000000000000000000000000000000000000000..4ad4217996572e8e4bb04ddd49374306ee43721a --- /dev/null +++ b/data/100_5_2-neighbors_of_molecule_43_95.graphml @@ -0,0 +1,199 @@ +<?xml version='1.0' encoding='utf-8'?> +<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd"> + <key attr.name="id" attr.type="string" for="edge" id="d4" /> + <key attr.name="contigs" attr.type="string" for="edge" id="d3" /> + <key attr.name="mi" attr.type="long" for="node" id="d2" /> + <key attr.name="label" attr.type="string" for="node" id="d1" /> + <key attr.name="mode" attr.type="string" for="graph" id="d0" /> + <graph edgedefault="undirected"> + <node id="7:94_47-MI1"> + <data key="d1">7:94_47-MI1</data> + <data key="d2">1</data> + </node> + <node id="45:92_75"> + <data key="d1">45:92_75</data> + <data key="d2">1</data> + </node> + <node id="16:93_91"> + <data key="d1">16:93_91</data> + <data key="d2">1</data> + </node> + <node id="29:41_16"> + <data key="d1">29:41_16</data> + <data key="d2">1</data> + </node> + <node id="39:26_97"> + <data key="d1">39:26_97</data> + <data key="d2">1</data> + </node> + <node id="38:98_52"> + <data key="d1">38:98_52</data> + <data key="d2">1</data> + </node> + <node id="42:48_39"> + <data key="d1">42:48_39</data> + <data key="d2">1</data> + </node> + <node id="11:44_70-MI1"> + <data key="d1">11:44_70-MI1</data> + <data key="d2">1</data> + </node> + <node id="43:1_46"> + <data key="d1">43:1_46</data> + <data key="d2">1</data> + </node> + <node id="37:22_42"> + <data key="d1">37:22_42</data> + <data key="d2">1</data> + </node> + <node id="25:99_90"> + <data key="d1">25:99_90</data> + <data key="d2">1</data> + </node> + <node id="27:13_40"> + <data key="d1">27:13_40</data> + <data key="d2">1</data> + </node> + <node id="20:72_96"> + <data key="d1">20:72_96</data> + <data key="d2">1</data> + </node> + <node id="9:85_45-MI1"> + <data key="d1">9:85_45-MI1</data> + <data key="d2">1</data> + </node> + <edge source="7:94_47-MI1" target="45:92_75"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="16:93_91"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="39:26_97"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="38:98_52"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="42:48_39"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="43:1_46"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="25:99_90"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="20:72_96"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="7:94_47-MI1" target="11:44_70-MI1"> + <data key="d3" /> + </edge> + <edge source="45:92_75" target="16:93_91"> + <data key="d4">187</data> + </edge> + <edge source="45:92_75" target="20:72_96"> + <data key="d4">212</data> + </edge> + <edge source="45:92_75" target="25:99_90"> + <data key="d4">254</data> + </edge> + <edge source="16:93_91" target="25:99_90"> + <data key="d4">186</data> + </edge> + <edge source="16:93_91" target="16:93_91"> + <data key="d4">188</data> + </edge> + <edge source="16:93_91" target="20:72_96"> + <data key="d4">189</data> + </edge> + <edge source="16:93_91" target="39:26_97"> + <data key="d4">190</data> + </edge> + <edge source="29:41_16" target="27:13_40"> + <data key="d4">264</data> + </edge> + <edge source="29:41_16" target="42:48_39"> + <data key="d4">278</data> + </edge> + <edge source="29:41_16" target="37:22_42"> + <data key="d4">279</data> + </edge> + <edge source="29:41_16" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="29:41_16" target="11:44_70-MI1"> + <data key="d3" /> + </edge> + <edge source="39:26_97" target="20:72_96"> + <data key="d4">214</data> + </edge> + <edge source="39:26_97" target="25:99_90"> + <data key="d4">255</data> + </edge> + <edge source="39:26_97" target="37:22_42"> + <data key="d4">319</data> + </edge> + <edge source="39:26_97" target="38:98_52"> + <data key="d4">325</data> + </edge> + <edge source="38:98_52" target="20:72_96"> + <data key="d4">215</data> + </edge> + <edge source="38:98_52" target="25:99_90"> + <data key="d4">256</data> + </edge> + <edge source="38:98_52" target="42:48_39"> + <data key="d4">322</data> + </edge> + <edge source="42:48_39" target="27:13_40"> + <data key="d4">266</data> + </edge> + <edge source="42:48_39" target="37:22_42"> + <data key="d4">320</data> + </edge> + <edge source="42:48_39" target="43:1_46"> + <data key="d4">332</data> + </edge> + <edge source="42:48_39" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="42:48_39" target="11:44_70-MI1"> + <data key="d3" /> + </edge> + <edge source="11:44_70-MI1" target="43:1_46"> + <data key="d3" /> + </edge> + <edge source="11:44_70-MI1" target="37:22_42"> + <data key="d3" /> + </edge> + <edge source="11:44_70-MI1" target="27:13_40"> + <data key="d3" /> + </edge> + <edge source="11:44_70-MI1" target="20:72_96"> + <data key="d3" /> + </edge> + <edge source="11:44_70-MI1" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="43:1_46" target="37:22_42"> + <data key="d4">321</data> + </edge> + <edge source="43:1_46" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="37:22_42" target="27:13_40"> + <data key="d4">267</data> + </edge> + <edge source="37:22_42" target="9:85_45-MI1"> + <data key="d3" /> + </edge> + <edge source="25:99_90" target="20:72_96"> + <data key="d4">216</data> + </edge> + <data key="d0">static</data> + </graph> +</graphml> diff --git a/data/100_5_2-neighbors_of_molecule_43_95.graphml.gephi b/data/100_5_2-neighbors_of_molecule_43_95.graphml.gephi new file mode 100644 index 0000000000000000000000000000000000000000..33601c664a9cbbb2cf4359c7f0c9d29961285bca Binary files /dev/null and b/data/100_5_2-neighbors_of_molecule_43_95.graphml.gephi differ diff --git a/data/simulated_barcodes_100_5_2.gexf b/data/simulated_barcodes_100_5_2.gexf new file mode 100644 index 0000000000000000000000000000000000000000..7430850e85b052f620d68c7c54c32979655468d5 --- /dev/null +++ b/data/simulated_barcodes_100_5_2.gexf @@ -0,0 +1,406 @@ +<?xml version='1.0' encoding='utf-8'?> +<gexf version="1.2" xmlns="http://www.gexf.net/1.2draft" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.w3.org/2001/XMLSchema-instance"> + <graph defaultedgetype="undirected" mode="static" name=""> + <meta> + <creator>NetworkX 2.2</creator> + <lastmodified>18/02/2019</lastmodified> + </meta> + <nodes> + <node id="0:21_83" label="0:21_83" /> + <node id="1:53_56" label="1:53_56" /> + <node id="2:68_67" label="2:68_67" /> + <node id="3:80_10" label="3:80_10" /> + <node id="4:82_73" label="4:82_73" /> + <node id="5:9_11" label="5:9_11" /> + <node id="6:54_12" label="6:54_12" /> + <node id="7:94_47" label="7:94_47" /> + <node id="8:78_71" label="8:78_71" /> + <node id="9:85_45" label="9:85_45" /> + <node id="10:24_65" label="10:24_65" /> + <node id="11:44_70" label="11:44_70" /> + <node id="12:66_19" label="12:66_19" /> + <node id="13:38_23" label="13:38_23" /> + <node id="14:43_95" label="14:43_95" /> + <node id="15:15_4" label="15:15_4" /> + <node id="16:93_91" label="16:93_91" /> + <node id="17:7_84" label="17:7_84" /> + <node id="18:77_69" label="18:77_69" /> + <node id="19:89_79" label="19:89_79" /> + <node id="20:72_96" label="20:72_96" /> + <node id="21:8_59" label="21:8_59" /> + <node id="22:25_81" label="22:25_81" /> + <node id="23:37_32" label="23:37_32" /> + <node id="24:58_31" label="24:58_31" /> + <node id="25:99_90" label="25:99_90" /> + <node id="26:6_55" label="26:6_55" /> + <node id="27:13_40" label="27:13_40" /> + <node id="28:74_3" label="28:74_3" /> + <node id="29:41_16" label="29:41_16" /> + <node id="30:33_64" label="30:33_64" /> + <node id="31:49_57" label="31:49_57" /> + <node id="32:14_36" label="32:14_36" /> + <node id="33:0_61" label="33:0_61" /> + <node id="34:29_62" label="34:29_62" /> + <node id="35:18_35" label="35:18_35" /> + <node id="36:76_27" label="36:76_27" /> + <node id="37:22_42" label="37:22_42" /> + <node id="38:98_52" label="38:98_52" /> + <node id="39:26_97" label="39:26_97" /> + <node id="40:20_30" label="40:20_30" /> + <node id="41:60_28" label="41:60_28" /> + <node id="42:48_39" label="42:48_39" /> + <node id="43:1_46" label="43:1_46" /> + <node id="44:51_34" label="44:51_34" /> + <node id="45:92_75" label="45:92_75" /> + <node id="46:63_86" label="46:63_86" /> + <node id="47:2_50" label="47:2_50" /> + <node id="48:17_87" label="48:17_87" /> + <node id="49:88_5" label="49:88_5" /> + </nodes> + <edges> + <edge id="0" source="0:21_83" target="48:17_87" /> + <edge id="1" source="0:21_83" target="35:18_35" /> + <edge id="2" source="0:21_83" target="12:66_19" /> + <edge id="3" source="0:21_83" target="40:20_30" /> + <edge id="4" source="0:21_83" target="37:22_42" /> + <edge id="5" source="0:21_83" target="13:38_23" /> + <edge id="6" source="0:21_83" target="10:24_65" /> + <edge id="7" source="0:21_83" target="22:25_81" /> + <edge id="8" source="0:21_83" target="19:89_79" /> + <edge id="9" source="0:21_83" target="3:80_10" /> + <edge id="10" source="0:21_83" target="4:82_73" /> + <edge id="11" source="0:21_83" target="17:7_84" /> + <edge id="12" source="0:21_83" target="9:85_45" /> + <edge id="13" source="0:21_83" target="46:63_86" /> + <edge id="14" source="1:53_56" target="31:49_57" /> + <edge id="15" source="1:53_56" target="47:2_50" /> + <edge id="16" source="1:53_56" target="44:51_34" /> + <edge id="17" source="1:53_56" target="38:98_52" /> + <edge id="18" source="1:53_56" target="6:54_12" /> + <edge id="19" source="1:53_56" target="26:6_55" /> + <edge id="20" source="1:53_56" target="1:53_56" /> + <edge id="21" source="1:53_56" target="24:58_31" /> + <edge id="22" source="1:53_56" target="21:8_59" /> + <edge id="23" source="1:53_56" target="41:60_28" /> + <edge id="24" source="2:68_67" target="46:63_86" /> + <edge id="25" source="2:68_67" target="30:33_64" /> + <edge id="26" source="2:68_67" target="10:24_65" /> + <edge id="27" source="2:68_67" target="12:66_19" /> + <edge id="28" source="2:68_67" target="2:68_67" /> + <edge id="29" source="2:68_67" target="18:77_69" /> + <edge id="30" source="2:68_67" target="11:44_70" /> + <edge id="31" source="2:68_67" target="8:78_71" /> + <edge id="32" source="2:68_67" target="20:72_96" /> + <edge id="33" source="3:80_10" target="26:6_55" /> + <edge id="34" source="3:80_10" target="17:7_84" /> + <edge id="35" source="3:80_10" target="21:8_59" /> + <edge id="36" source="3:80_10" target="5:9_11" /> + <edge id="37" source="3:80_10" target="6:54_12" /> + <edge id="38" source="3:80_10" target="27:13_40" /> + <edge id="39" source="3:80_10" target="32:14_36" /> + <edge id="40" source="3:80_10" target="36:76_27" /> + <edge id="41" source="3:80_10" target="18:77_69" /> + <edge id="42" source="3:80_10" target="8:78_71" /> + <edge id="43" source="3:80_10" target="19:89_79" /> + <edge id="44" source="3:80_10" target="22:25_81" /> + <edge id="45" source="3:80_10" target="4:82_73" /> + <edge id="46" source="4:82_73" target="18:77_69" /> + <edge id="47" source="4:82_73" target="11:44_70" /> + <edge id="48" source="4:82_73" target="8:78_71" /> + <edge id="49" source="4:82_73" target="20:72_96" /> + <edge id="50" source="4:82_73" target="28:74_3" /> + <edge id="51" source="4:82_73" target="45:92_75" /> + <edge id="52" source="4:82_73" target="36:76_27" /> + <edge id="53" source="4:82_73" target="19:89_79" /> + <edge id="54" source="4:82_73" target="22:25_81" /> + <edge id="55" source="4:82_73" target="17:7_84" /> + <edge id="56" source="4:82_73" target="9:85_45" /> + <edge id="57" source="4:82_73" target="46:63_86" /> + <edge id="58" source="5:9_11" target="49:88_5" /> + <edge id="59" source="5:9_11" target="26:6_55" /> + <edge id="60" source="5:9_11" target="17:7_84" /> + <edge id="61" source="5:9_11" target="21:8_59" /> + <edge id="62" source="5:9_11" target="5:9_11" /> + <edge id="63" source="5:9_11" target="6:54_12" /> + <edge id="64" source="5:9_11" target="27:13_40" /> + <edge id="65" source="5:9_11" target="32:14_36" /> + <edge id="66" source="5:9_11" target="15:15_4" /> + <edge id="67" source="6:54_12" target="21:8_59" /> + <edge id="68" source="6:54_12" target="27:13_40" /> + <edge id="69" source="6:54_12" target="32:14_36" /> + <edge id="70" source="6:54_12" target="15:15_4" /> + <edge id="71" source="6:54_12" target="29:41_16" /> + <edge id="72" source="6:54_12" target="47:2_50" /> + <edge id="73" source="6:54_12" target="44:51_34" /> + <edge id="74" source="6:54_12" target="38:98_52" /> + <edge id="75" source="6:54_12" target="26:6_55" /> + <edge id="76" source="6:54_12" target="31:49_57" /> + <edge id="77" source="6:54_12" target="24:58_31" /> + <edge id="78" source="7:94_47" target="14:43_95" /> + <edge id="79" source="7:94_47" target="11:44_70" /> + <edge id="80" source="7:94_47" target="9:85_45" /> + <edge id="81" source="7:94_47" target="43:1_46" /> + <edge id="82" source="7:94_47" target="42:48_39" /> + <edge id="83" source="7:94_47" target="31:49_57" /> + <edge id="84" source="7:94_47" target="47:2_50" /> + <edge id="85" source="7:94_47" target="44:51_34" /> + <edge id="86" source="7:94_47" target="25:99_90" /> + <edge id="87" source="7:94_47" target="16:93_91" /> + <edge id="88" source="7:94_47" target="45:92_75" /> + <edge id="89" source="7:94_47" target="20:72_96" /> + <edge id="90" source="7:94_47" target="39:26_97" /> + <edge id="91" source="7:94_47" target="38:98_52" /> + <edge id="92" source="8:78_71" target="18:77_69" /> + <edge id="93" source="8:78_71" target="11:44_70" /> + <edge id="94" source="8:78_71" target="20:72_96" /> + <edge id="95" source="8:78_71" target="28:74_3" /> + <edge id="96" source="8:78_71" target="45:92_75" /> + <edge id="97" source="8:78_71" target="36:76_27" /> + <edge id="98" source="8:78_71" target="19:89_79" /> + <edge id="99" source="8:78_71" target="22:25_81" /> + <edge id="100" source="9:85_45" target="29:41_16" /> + <edge id="101" source="9:85_45" target="37:22_42" /> + <edge id="102" source="9:85_45" target="14:43_95" /> + <edge id="103" source="9:85_45" target="11:44_70" /> + <edge id="104" source="9:85_45" target="43:1_46" /> + <edge id="105" source="9:85_45" target="42:48_39" /> + <edge id="106" source="9:85_45" target="31:49_57" /> + <edge id="107" source="9:85_45" target="22:25_81" /> + <edge id="108" source="9:85_45" target="17:7_84" /> + <edge id="109" source="9:85_45" target="46:63_86" /> + <edge id="110" source="9:85_45" target="48:17_87" /> + <edge id="111" source="9:85_45" target="49:88_5" /> + <edge id="112" source="9:85_45" target="19:89_79" /> + <edge id="113" source="10:24_65" target="40:20_30" /> + <edge id="114" source="10:24_65" target="37:22_42" /> + <edge id="115" source="10:24_65" target="13:38_23" /> + <edge id="116" source="10:24_65" target="22:25_81" /> + <edge id="117" source="10:24_65" target="39:26_97" /> + <edge id="118" source="10:24_65" target="36:76_27" /> + <edge id="119" source="10:24_65" target="41:60_28" /> + <edge id="120" source="10:24_65" target="33:0_61" /> + <edge id="121" source="10:24_65" target="34:29_62" /> + <edge id="122" source="10:24_65" target="46:63_86" /> + <edge id="123" source="10:24_65" target="30:33_64" /> + <edge id="124" source="10:24_65" target="12:66_19" /> + <edge id="125" source="10:24_65" target="18:77_69" /> + <edge id="126" source="11:44_70" target="27:13_40" /> + <edge id="127" source="11:44_70" target="29:41_16" /> + <edge id="128" source="11:44_70" target="37:22_42" /> + <edge id="129" source="11:44_70" target="14:43_95" /> + <edge id="130" source="11:44_70" target="43:1_46" /> + <edge id="131" source="11:44_70" target="42:48_39" /> + <edge id="132" source="11:44_70" target="12:66_19" /> + <edge id="133" source="11:44_70" target="18:77_69" /> + <edge id="134" source="11:44_70" target="20:72_96" /> + <edge id="135" source="11:44_70" target="28:74_3" /> + <edge id="136" source="12:66_19" target="15:15_4" /> + <edge id="137" source="12:66_19" target="29:41_16" /> + <edge id="138" source="12:66_19" target="48:17_87" /> + <edge id="139" source="12:66_19" target="35:18_35" /> + <edge id="140" source="12:66_19" target="40:20_30" /> + <edge id="141" source="12:66_19" target="37:22_42" /> + <edge id="142" source="12:66_19" target="13:38_23" /> + <edge id="143" source="12:66_19" target="34:29_62" /> + <edge id="144" source="12:66_19" target="46:63_86" /> + <edge id="145" source="12:66_19" target="30:33_64" /> + <edge id="146" source="12:66_19" target="18:77_69" /> + <edge id="147" source="13:38_23" target="40:20_30" /> + <edge id="148" source="13:38_23" target="37:22_42" /> + <edge id="149" source="13:38_23" target="22:25_81" /> + <edge id="150" source="13:38_23" target="39:26_97" /> + <edge id="151" source="13:38_23" target="36:76_27" /> + <edge id="152" source="13:38_23" target="44:51_34" /> + <edge id="153" source="13:38_23" target="35:18_35" /> + <edge id="154" source="13:38_23" target="32:14_36" /> + <edge id="155" source="13:38_23" target="23:37_32" /> + <edge id="156" source="13:38_23" target="42:48_39" /> + <edge id="157" source="13:38_23" target="27:13_40" /> + <edge id="158" source="13:38_23" target="29:41_16" /> + <edge id="159" source="14:43_95" target="42:48_39" /> + <edge id="160" source="14:43_95" target="27:13_40" /> + <edge id="161" source="14:43_95" target="29:41_16" /> + <edge id="162" source="14:43_95" target="37:22_42" /> + <edge id="163" source="14:43_95" target="43:1_46" /> + <edge id="164" source="14:43_95" target="16:93_91" /> + <edge id="165" source="14:43_95" target="45:92_75" /> + <edge id="166" source="14:43_95" target="20:72_96" /> + <edge id="167" source="14:43_95" target="39:26_97" /> + <edge id="168" source="14:43_95" target="38:98_52" /> + <edge id="169" source="14:43_95" target="25:99_90" /> + <edge id="170" source="15:15_4" target="33:0_61" /> + <edge id="171" source="15:15_4" target="43:1_46" /> + <edge id="172" source="15:15_4" target="47:2_50" /> + <edge id="173" source="15:15_4" target="28:74_3" /> + <edge id="174" source="15:15_4" target="49:88_5" /> + <edge id="175" source="15:15_4" target="26:6_55" /> + <edge id="176" source="15:15_4" target="17:7_84" /> + <edge id="177" source="15:15_4" target="21:8_59" /> + <edge id="178" source="15:15_4" target="27:13_40" /> + <edge id="179" source="15:15_4" target="32:14_36" /> + <edge id="180" source="15:15_4" target="29:41_16" /> + <edge id="181" source="15:15_4" target="48:17_87" /> + <edge id="182" source="15:15_4" target="35:18_35" /> + <edge id="183" source="16:93_91" target="48:17_87" /> + <edge id="184" source="16:93_91" target="49:88_5" /> + <edge id="185" source="16:93_91" target="19:89_79" /> + <edge id="186" source="16:93_91" target="25:99_90" /> + <edge id="187" source="16:93_91" target="45:92_75" /> + <edge id="188" source="16:93_91" target="16:93_91" /> + <edge id="189" source="16:93_91" target="20:72_96" /> + <edge id="190" source="16:93_91" target="39:26_97" /> + <edge id="191" source="17:7_84" target="28:74_3" /> + <edge id="192" source="17:7_84" target="49:88_5" /> + <edge id="193" source="17:7_84" target="26:6_55" /> + <edge id="194" source="17:7_84" target="21:8_59" /> + <edge id="195" source="17:7_84" target="22:25_81" /> + <edge id="196" source="17:7_84" target="46:63_86" /> + <edge id="197" source="17:7_84" target="48:17_87" /> + <edge id="198" source="18:77_69" target="20:72_96" /> + <edge id="199" source="18:77_69" target="28:74_3" /> + <edge id="200" source="18:77_69" target="45:92_75" /> + <edge id="201" source="18:77_69" target="36:76_27" /> + <edge id="202" source="18:77_69" target="19:89_79" /> + <edge id="203" source="18:77_69" target="22:25_81" /> + <edge id="204" source="19:89_79" target="45:92_75" /> + <edge id="205" source="19:89_79" target="36:76_27" /> + <edge id="206" source="19:89_79" target="22:25_81" /> + <edge id="207" source="19:89_79" target="46:63_86" /> + <edge id="208" source="19:89_79" target="48:17_87" /> + <edge id="209" source="19:89_79" target="49:88_5" /> + <edge id="210" source="19:89_79" target="25:99_90" /> + <edge id="211" source="20:72_96" target="28:74_3" /> + <edge id="212" source="20:72_96" target="45:92_75" /> + <edge id="213" source="20:72_96" target="36:76_27" /> + <edge id="214" source="20:72_96" target="39:26_97" /> + <edge id="215" source="20:72_96" target="38:98_52" /> + <edge id="216" source="20:72_96" target="25:99_90" /> + <edge id="217" source="21:8_59" target="49:88_5" /> + <edge id="218" source="21:8_59" target="26:6_55" /> + <edge id="219" source="21:8_59" target="31:49_57" /> + <edge id="220" source="21:8_59" target="24:58_31" /> + <edge id="221" source="21:8_59" target="41:60_28" /> + <edge id="222" source="21:8_59" target="33:0_61" /> + <edge id="223" source="21:8_59" target="34:29_62" /> + <edge id="224" source="21:8_59" target="46:63_86" /> + <edge id="225" source="22:25_81" target="37:22_42" /> + <edge id="226" source="22:25_81" target="39:26_97" /> + <edge id="227" source="22:25_81" target="36:76_27" /> + <edge id="228" source="22:25_81" target="41:60_28" /> + <edge id="229" source="22:25_81" target="34:29_62" /> + <edge id="230" source="23:37_32" target="41:60_28" /> + <edge id="231" source="23:37_32" target="34:29_62" /> + <edge id="232" source="23:37_32" target="40:20_30" /> + <edge id="233" source="23:37_32" target="24:58_31" /> + <edge id="234" source="23:37_32" target="30:33_64" /> + <edge id="235" source="23:37_32" target="44:51_34" /> + <edge id="236" source="23:37_32" target="35:18_35" /> + <edge id="237" source="23:37_32" target="32:14_36" /> + <edge id="238" source="23:37_32" target="42:48_39" /> + <edge id="239" source="23:37_32" target="27:13_40" /> + <edge id="240" source="23:37_32" target="29:41_16" /> + <edge id="241" source="24:58_31" target="36:76_27" /> + <edge id="242" source="24:58_31" target="41:60_28" /> + <edge id="243" source="24:58_31" target="34:29_62" /> + <edge id="244" source="24:58_31" target="40:20_30" /> + <edge id="245" source="24:58_31" target="30:33_64" /> + <edge id="246" source="24:58_31" target="44:51_34" /> + <edge id="247" source="24:58_31" target="35:18_35" /> + <edge id="248" source="24:58_31" target="26:6_55" /> + <edge id="249" source="24:58_31" target="31:49_57" /> + <edge id="250" source="24:58_31" target="33:0_61" /> + <edge id="251" source="25:99_90" target="46:63_86" /> + <edge id="252" source="25:99_90" target="48:17_87" /> + <edge id="253" source="25:99_90" target="49:88_5" /> + <edge id="254" source="25:99_90" target="45:92_75" /> + <edge id="255" source="25:99_90" target="39:26_97" /> + <edge id="256" source="25:99_90" target="38:98_52" /> + <edge id="257" source="26:6_55" target="47:2_50" /> + <edge id="258" source="26:6_55" target="28:74_3" /> + <edge id="259" source="26:6_55" target="49:88_5" /> + <edge id="260" source="26:6_55" target="44:51_34" /> + <edge id="261" source="26:6_55" target="38:98_52" /> + <edge id="262" source="26:6_55" target="31:49_57" /> + <edge id="263" source="27:13_40" target="32:14_36" /> + <edge id="264" source="27:13_40" target="29:41_16" /> + <edge id="265" source="27:13_40" target="48:17_87" /> + <edge id="266" source="27:13_40" target="42:48_39" /> + <edge id="267" source="27:13_40" target="37:22_42" /> + <edge id="268" source="28:74_3" target="33:0_61" /> + <edge id="269" source="28:74_3" target="43:1_46" /> + <edge id="270" source="28:74_3" target="47:2_50" /> + <edge id="271" source="28:74_3" target="49:88_5" /> + <edge id="272" source="28:74_3" target="45:92_75" /> + <edge id="273" source="28:74_3" target="36:76_27" /> + <edge id="274" source="29:41_16" target="32:14_36" /> + <edge id="275" source="29:41_16" target="48:17_87" /> + <edge id="276" source="29:41_16" target="35:18_35" /> + <edge id="277" source="29:41_16" target="40:20_30" /> + <edge id="278" source="29:41_16" target="42:48_39" /> + <edge id="279" source="29:41_16" target="37:22_42" /> + <edge id="280" source="30:33_64" target="34:29_62" /> + <edge id="281" source="30:33_64" target="40:20_30" /> + <edge id="282" source="30:33_64" target="44:51_34" /> + <edge id="283" source="30:33_64" target="35:18_35" /> + <edge id="284" source="30:33_64" target="32:14_36" /> + <edge id="285" source="30:33_64" target="41:60_28" /> + <edge id="286" source="30:33_64" target="33:0_61" /> + <edge id="287" source="30:33_64" target="46:63_86" /> + <edge id="288" source="31:49_57" target="43:1_46" /> + <edge id="289" source="31:49_57" target="42:48_39" /> + <edge id="290" source="31:49_57" target="47:2_50" /> + <edge id="291" source="31:49_57" target="44:51_34" /> + <edge id="292" source="31:49_57" target="38:98_52" /> + <edge id="293" source="31:49_57" target="41:60_28" /> + <edge id="294" source="31:49_57" target="33:0_61" /> + <edge id="295" source="32:14_36" target="48:17_87" /> + <edge id="296" source="32:14_36" target="35:18_35" /> + <edge id="297" source="32:14_36" target="44:51_34" /> + <edge id="298" source="32:14_36" target="42:48_39" /> + <edge id="299" source="33:0_61" target="43:1_46" /> + <edge id="300" source="33:0_61" target="47:2_50" /> + <edge id="301" source="33:0_61" target="41:60_28" /> + <edge id="302" source="33:0_61" target="34:29_62" /> + <edge id="303" source="33:0_61" target="46:63_86" /> + <edge id="304" source="34:29_62" target="39:26_97" /> + <edge id="305" source="34:29_62" target="36:76_27" /> + <edge id="306" source="34:29_62" target="41:60_28" /> + <edge id="307" source="34:29_62" target="40:20_30" /> + <edge id="308" source="34:29_62" target="46:63_86" /> + <edge id="309" source="35:18_35" target="48:17_87" /> + <edge id="310" source="35:18_35" target="40:20_30" /> + <edge id="311" source="35:18_35" target="37:22_42" /> + <edge id="312" source="35:18_35" target="44:51_34" /> + <edge id="313" source="35:18_35" target="42:48_39" /> + <edge id="314" source="36:76_27" target="39:26_97" /> + <edge id="315" source="36:76_27" target="41:60_28" /> + <edge id="316" source="36:76_27" target="40:20_30" /> + <edge id="317" source="36:76_27" target="45:92_75" /> + <edge id="318" source="37:22_42" target="40:20_30" /> + <edge id="319" source="37:22_42" target="39:26_97" /> + <edge id="320" source="37:22_42" target="42:48_39" /> + <edge id="321" source="37:22_42" target="43:1_46" /> + <edge id="322" source="38:98_52" target="42:48_39" /> + <edge id="323" source="38:98_52" target="47:2_50" /> + <edge id="324" source="38:98_52" target="44:51_34" /> + <edge id="325" source="38:98_52" target="39:26_97" /> + <edge id="326" source="39:26_97" target="41:60_28" /> + <edge id="327" source="39:26_97" target="40:20_30" /> + <edge id="328" source="40:20_30" target="48:17_87" /> + <edge id="329" source="40:20_30" target="41:60_28" /> + <edge id="330" source="40:20_30" target="44:51_34" /> + <edge id="331" source="41:60_28" target="46:63_86" /> + <edge id="332" source="42:48_39" target="43:1_46" /> + <edge id="333" source="42:48_39" target="47:2_50" /> + <edge id="334" source="42:48_39" target="44:51_34" /> + <edge id="335" source="43:1_46" target="47:2_50" /> + <edge id="336" source="43:1_46" target="49:88_5" /> + <edge id="337" source="44:51_34" target="47:2_50" /> + <edge id="338" source="45:92_75" target="49:88_5" /> + <edge id="339" source="46:63_86" target="48:17_87" /> + <edge id="340" source="46:63_86" target="49:88_5" /> + <edge id="341" source="47:2_50" target="49:88_5" /> + <edge id="342" source="48:17_87" target="49:88_5" /> + </edges> + </graph> +</gexf> diff --git a/data/simulated_molecules_100_5.graphml b/data/simulated_molecules_100_5.graphml new file mode 100644 index 0000000000000000000000000000000000000000..263eba26512f9bb658e848c861219d1e3f6c190a --- /dev/null +++ b/data/simulated_molecules_100_5.graphml @@ -0,0 +1,495 @@ +<?xml version='1.0' encoding='utf-8'?> +<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd"> + <graph edgedefault="undirected"> + <node id="0" /> + <node id="1" /> + <node id="2" /> + <node id="3" /> + <node id="4" /> + <node id="5" /> + <node id="6" /> + <node id="7" /> + <node id="8" /> + <node id="9" /> + <node id="10" /> + <node id="11" /> + <node id="12" /> + <node id="13" /> + <node id="14" /> + <node id="15" /> + <node id="16" /> + <node id="17" /> + <node id="18" /> + <node id="19" /> + <node id="20" /> + <node id="21" /> + <node id="22" /> + <node id="23" /> + <node id="24" /> + <node id="25" /> + <node id="26" /> + <node id="27" /> + <node id="28" /> + <node id="29" /> + <node id="30" /> + <node id="31" /> + <node id="32" /> + <node id="33" /> + <node id="34" /> + <node id="35" /> + <node id="36" /> + <node id="37" /> + <node id="38" /> + <node id="39" /> + <node id="40" /> + <node id="41" /> + <node id="42" /> + <node id="43" /> + <node id="44" /> + <node id="45" /> + <node id="46" /> + <node id="47" /> + <node id="48" /> + <node id="49" /> + <node id="50" /> + <node id="51" /> + <node id="52" /> + <node id="53" /> + <node id="54" /> + <node id="55" /> + <node id="56" /> + <node id="57" /> + <node id="58" /> + <node id="59" /> + <node id="60" /> + <node id="61" /> + <node id="62" /> + <node id="63" /> + <node id="64" /> + <node id="65" /> + <node id="66" /> + <node id="67" /> + <node id="68" /> + <node id="69" /> + <node id="70" /> + <node id="71" /> + <node id="72" /> + <node id="73" /> + <node id="74" /> + <node id="75" /> + <node id="76" /> + <node id="77" /> + <node id="78" /> + <node id="79" /> + <node id="80" /> + <node id="81" /> + <node id="82" /> + <node id="83" /> + <node id="84" /> + <node id="85" /> + <node id="86" /> + <node id="87" /> + <node id="88" /> + <node id="89" /> + <node id="90" /> + <node id="91" /> + <node id="92" /> + <node id="93" /> + <node id="94" /> + <node id="95" /> + <node id="96" /> + <node id="97" /> + <node id="98" /> + <node id="99" /> + <edge source="0" target="1" /> + <edge source="0" target="2" /> + <edge source="0" target="3" /> + <edge source="0" target="4" /> + <edge source="1" target="2" /> + <edge source="1" target="3" /> + <edge source="1" target="4" /> + <edge source="1" target="5" /> + <edge source="2" target="3" /> + <edge source="2" target="4" /> + <edge source="2" target="5" /> + <edge source="2" target="6" /> + <edge source="3" target="4" /> + <edge source="3" target="5" /> + <edge source="3" target="6" /> + <edge source="3" target="7" /> + <edge source="4" target="5" /> + <edge source="4" target="6" /> + <edge source="4" target="7" /> + <edge source="4" target="8" /> + <edge source="5" target="6" /> + <edge source="5" target="7" /> + <edge source="5" target="8" /> + <edge source="5" target="9" /> + <edge source="6" target="7" /> + <edge source="6" target="8" /> + <edge source="6" target="9" /> + <edge source="6" target="10" /> + <edge source="7" target="8" /> + <edge source="7" target="9" /> + <edge source="7" target="10" /> + <edge source="7" target="11" /> + <edge source="8" target="9" /> + <edge source="8" target="10" /> + <edge source="8" target="11" /> + <edge source="8" target="12" /> + <edge source="9" target="10" /> + <edge source="9" target="11" /> + <edge source="9" target="12" /> + <edge source="9" target="13" /> + <edge source="10" target="11" /> + <edge source="10" target="12" /> + <edge source="10" target="13" /> + <edge source="10" target="14" /> + <edge source="11" target="12" /> + <edge source="11" target="13" /> + <edge source="11" target="14" /> + <edge source="11" target="15" /> + <edge source="12" target="13" /> + <edge source="12" target="14" /> + <edge source="12" target="15" /> + <edge source="12" target="16" /> + <edge source="13" target="14" /> + <edge source="13" target="15" /> + <edge source="13" target="16" /> + <edge source="13" target="17" /> + <edge source="14" target="15" /> + <edge source="14" target="16" /> + <edge source="14" target="17" /> + <edge source="14" target="18" /> + <edge source="15" target="16" /> + <edge source="15" target="17" /> + <edge source="15" target="18" /> + <edge source="15" target="19" /> + <edge source="16" target="17" /> + <edge source="16" target="18" /> + <edge source="16" target="19" /> + <edge source="16" target="20" /> + <edge source="17" target="18" /> + <edge source="17" target="19" /> + <edge source="17" target="20" /> + <edge source="17" target="21" /> + <edge source="18" target="19" /> + <edge source="18" target="20" /> + <edge source="18" target="21" /> + <edge source="18" target="22" /> + <edge source="19" target="20" /> + <edge source="19" target="21" /> + <edge source="19" target="22" /> + <edge source="19" target="23" /> + <edge source="20" target="21" /> + <edge source="20" target="22" /> + <edge source="20" target="23" /> + <edge source="20" target="24" /> + <edge source="21" target="22" /> + <edge source="21" target="23" /> + <edge source="21" target="24" /> + <edge source="21" target="25" /> + <edge source="22" target="23" /> + <edge source="22" target="24" /> + <edge source="22" target="25" /> + <edge source="22" target="26" /> + <edge source="23" target="24" /> + <edge source="23" target="25" /> + <edge source="23" target="26" /> + <edge source="23" target="27" /> + <edge source="24" target="25" /> + <edge source="24" target="26" /> + <edge source="24" target="27" /> + <edge source="24" target="28" /> + <edge source="25" target="26" /> + <edge source="25" target="27" /> + <edge source="25" target="28" /> + <edge source="25" target="29" /> + <edge source="26" target="27" /> + <edge source="26" target="28" /> + <edge source="26" target="29" /> + <edge source="26" target="30" /> + <edge source="27" target="28" /> + <edge source="27" target="29" /> + <edge source="27" target="30" /> + <edge source="27" target="31" /> + <edge source="28" target="29" /> + <edge source="28" target="30" /> + <edge source="28" target="31" /> + <edge source="28" target="32" /> + <edge source="29" target="30" /> + <edge source="29" target="31" /> + <edge source="29" target="32" /> + <edge source="29" target="33" /> + <edge source="30" target="31" /> + <edge source="30" target="32" /> + <edge source="30" target="33" /> + <edge source="30" target="34" /> + <edge source="31" target="32" /> + <edge source="31" target="33" /> + <edge source="31" target="34" /> + <edge source="31" target="35" /> + <edge source="32" target="33" /> + <edge source="32" target="34" /> + <edge source="32" target="35" /> + <edge source="32" target="36" /> + <edge source="33" target="34" /> + <edge source="33" target="35" /> + <edge source="33" target="36" /> + <edge source="33" target="37" /> + <edge source="34" target="35" /> + <edge source="34" target="36" /> + <edge source="34" target="37" /> + <edge source="34" target="38" /> + <edge source="35" target="36" /> + <edge source="35" target="37" /> + <edge source="35" target="38" /> + <edge source="35" target="39" /> + <edge source="36" target="37" /> + <edge source="36" target="38" /> + <edge source="36" target="39" /> + <edge source="36" target="40" /> + <edge source="37" target="38" /> + <edge source="37" target="39" /> + <edge source="37" target="40" /> + <edge source="37" target="41" /> + <edge source="38" target="39" /> + <edge source="38" target="40" /> + <edge source="38" target="41" /> + <edge source="38" target="42" /> + <edge source="39" target="40" /> + <edge source="39" target="41" /> + <edge source="39" target="42" /> + <edge source="39" target="43" /> + <edge source="40" target="41" /> + <edge source="40" target="42" /> + <edge source="40" target="43" /> + <edge source="40" target="44" /> + <edge source="41" target="42" /> + <edge source="41" target="43" /> + <edge source="41" target="44" /> + <edge source="41" target="45" /> + <edge source="42" target="43" /> + <edge source="42" target="44" /> + <edge source="42" target="45" /> + <edge source="42" target="46" /> + <edge source="43" target="44" /> + <edge source="43" target="45" /> + <edge source="43" target="46" /> + <edge source="43" target="47" /> + <edge source="44" target="45" /> + <edge source="44" target="46" /> + <edge source="44" target="47" /> + <edge source="44" target="48" /> + <edge source="45" target="46" /> + <edge source="45" target="47" /> + <edge source="45" target="48" /> + <edge source="45" target="49" /> + <edge source="46" target="47" /> + <edge source="46" target="48" /> + <edge source="46" target="49" /> + <edge source="46" target="50" /> + <edge source="47" target="48" /> + <edge source="47" target="49" /> + <edge source="47" target="50" /> + <edge source="47" target="51" /> + <edge source="48" target="49" /> + <edge source="48" target="50" /> + <edge source="48" target="51" /> + <edge source="48" target="52" /> + <edge source="49" target="50" /> + <edge source="49" target="51" /> + <edge source="49" target="52" /> + <edge source="49" target="53" /> + <edge source="50" target="51" /> + <edge source="50" target="52" /> + <edge source="50" target="53" /> + <edge source="50" target="54" /> + <edge source="51" target="52" /> + <edge source="51" target="53" /> + <edge source="51" target="54" /> + <edge source="51" target="55" /> + <edge source="52" target="53" /> + <edge source="52" target="54" /> + <edge source="52" target="55" /> + <edge source="52" target="56" /> + <edge source="53" target="54" /> + <edge source="53" target="55" /> + <edge source="53" target="56" /> + <edge source="53" target="57" /> + <edge source="54" target="55" /> + <edge source="54" target="56" /> + <edge source="54" target="57" /> + <edge source="54" target="58" /> + <edge source="55" target="56" /> + <edge source="55" target="57" /> + <edge source="55" target="58" /> + <edge source="55" target="59" /> + <edge source="56" target="57" /> + <edge source="56" target="58" /> + <edge source="56" target="59" /> + <edge source="56" target="60" /> + <edge source="57" target="58" /> + <edge source="57" target="59" /> + <edge source="57" target="60" /> + <edge source="57" target="61" /> + <edge source="58" target="59" /> + <edge source="58" target="60" /> + <edge source="58" target="61" /> + <edge source="58" target="62" /> + <edge source="59" target="60" /> + <edge source="59" target="61" /> + <edge source="59" target="62" /> + <edge source="59" target="63" /> + <edge source="60" target="61" /> + <edge source="60" target="62" /> + <edge source="60" target="63" /> + <edge source="60" target="64" /> + <edge source="61" target="62" /> + <edge source="61" target="63" /> + <edge source="61" target="64" /> + <edge source="61" target="65" /> + <edge source="62" target="63" /> + <edge source="62" target="64" /> + <edge source="62" target="65" /> + <edge source="62" target="66" /> + <edge source="63" target="64" /> + <edge source="63" target="65" /> + <edge source="63" target="66" /> + <edge source="63" target="67" /> + <edge source="64" target="65" /> + <edge source="64" target="66" /> + <edge source="64" target="67" /> + <edge source="64" target="68" /> + <edge source="65" target="66" /> + <edge source="65" target="67" /> + <edge source="65" target="68" /> + <edge source="65" target="69" /> + <edge source="66" target="67" /> + <edge source="66" target="68" /> + <edge source="66" target="69" /> + <edge source="66" target="70" /> + <edge source="67" target="68" /> + <edge source="67" target="69" /> + <edge source="67" target="70" /> + <edge source="67" target="71" /> + <edge source="68" target="69" /> + <edge source="68" target="70" /> + <edge source="68" target="71" /> + <edge source="68" target="72" /> + <edge source="69" target="70" /> + <edge source="69" target="71" /> + <edge source="69" target="72" /> + <edge source="69" target="73" /> + <edge source="70" target="71" /> + <edge source="70" target="72" /> + <edge source="70" target="73" /> + <edge source="70" target="74" /> + <edge source="71" target="72" /> + <edge source="71" target="73" /> + <edge source="71" target="74" /> + <edge source="71" target="75" /> + <edge source="72" target="73" /> + <edge source="72" target="74" /> + <edge source="72" target="75" /> + <edge source="72" target="76" /> + <edge source="73" target="74" /> + <edge source="73" target="75" /> + <edge source="73" target="76" /> + <edge source="73" target="77" /> + <edge source="74" target="75" /> + <edge source="74" target="76" /> + <edge source="74" target="77" /> + <edge source="74" target="78" /> + <edge source="75" target="76" /> + <edge source="75" target="77" /> + <edge source="75" target="78" /> + <edge source="75" target="79" /> + <edge source="76" target="77" /> + <edge source="76" target="78" /> + <edge source="76" target="79" /> + <edge source="76" target="80" /> + <edge source="77" target="78" /> + <edge source="77" target="79" /> + <edge source="77" target="80" /> + <edge source="77" target="81" /> + <edge source="78" target="79" /> + <edge source="78" target="80" /> + <edge source="78" target="81" /> + <edge source="78" target="82" /> + <edge source="79" target="80" /> + <edge source="79" target="81" /> + <edge source="79" target="82" /> + <edge source="79" target="83" /> + <edge source="80" target="81" /> + <edge source="80" target="82" /> + <edge source="80" target="83" /> + <edge source="80" target="84" /> + <edge source="81" target="82" /> + <edge source="81" target="83" /> + <edge source="81" target="84" /> + <edge source="81" target="85" /> + <edge source="82" target="83" /> + <edge source="82" target="84" /> + <edge source="82" target="85" /> + <edge source="82" target="86" /> + <edge source="83" target="84" /> + <edge source="83" target="85" /> + <edge source="83" target="86" /> + <edge source="83" target="87" /> + <edge source="84" target="85" /> + <edge source="84" target="86" /> + <edge source="84" target="87" /> + <edge source="84" target="88" /> + <edge source="85" target="86" /> + <edge source="85" target="87" /> + <edge source="85" target="88" /> + <edge source="85" target="89" /> + <edge source="86" target="87" /> + <edge source="86" target="88" /> + <edge source="86" target="89" /> + <edge source="86" target="90" /> + <edge source="87" target="88" /> + <edge source="87" target="89" /> + <edge source="87" target="90" /> + <edge source="87" target="91" /> + <edge source="88" target="89" /> + <edge source="88" target="90" /> + <edge source="88" target="91" /> + <edge source="88" target="92" /> + <edge source="89" target="90" /> + <edge source="89" target="91" /> + <edge source="89" target="92" /> + <edge source="89" target="93" /> + <edge source="90" target="91" /> + <edge source="90" target="92" /> + <edge source="90" target="93" /> + <edge source="90" target="94" /> + <edge source="91" target="92" /> + <edge source="91" target="93" /> + <edge source="91" target="94" /> + <edge source="91" target="95" /> + <edge source="92" target="93" /> + <edge source="92" target="94" /> + <edge source="92" target="95" /> + <edge source="92" target="96" /> + <edge source="93" target="94" /> + <edge source="93" target="95" /> + <edge source="93" target="96" /> + <edge source="93" target="97" /> + <edge source="94" target="95" /> + <edge source="94" target="96" /> + <edge source="94" target="97" /> + <edge source="94" target="98" /> + <edge source="95" target="96" /> + <edge source="95" target="97" /> + <edge source="95" target="98" /> + <edge source="95" target="99" /> + <edge source="96" target="97" /> + <edge source="96" target="98" /> + <edge source="96" target="99" /> + <edge source="97" target="98" /> + <edge source="97" target="99" /> + <edge source="98" target="99" /> + </graph> +</graphml>